scaffold_403397.1 (Arabidopsis lyrata)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 scaffold_403397.1 T245996_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.852 0.852
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.852 0.852
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_403397.1 LOB 2 83

Links

Other LOB family TFs
Other Arabidopsis lyrata TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000018149 Ailuropoda melanoleuca ENSAMEG00000018149 N
Alligator_sinensis_CCG009080.1 Alligator sinensis Alligator_sinensis_CCG009080.1 N
ENSAPLG00000007392 Anas platyrhynchos ENSAPLG00000007392 N
ENSACAG00000024733 Anolis carolinensis ENSACAG00000024733 N
ENSP00000326630-D1 Bos grunniens ENSP00000326630-D1 N
ZFPM1 Bos taurus ENSBTAG00000015766 N
ENSCJAG00000012840 Callithrix jacchus ENSCJAG00000012840 N
ENSCAFG00000032382 Canis familiaris ENSCAFG00000032382 N
Cmyd_10016724 Chelonia mydas Cmyd_10016724 N
ENSCSAG00000003107 Chlorocebus sabaeus ENSCSAG00000003107 N
ENSDNOG00000040837 Dasypus novemcinctus ENSDNOG00000040837 N
ENSDORG00000008940 Dipodomys ordii ENSDORG00000008940 N
ENSFALG00000006492 Ficedula albicollis ENSFALG00000006492 N
ZFPM1 Gallus gallus ENSGALG00000006099 N
ZFPM1 Homo sapiens ENSG00000179588 N
ENSSTOG00000027139 Ictidomys tridecemlineatus ENSSTOG00000027139 N
ZFPM1 Loxodonta africana ENSLAFG00000013561 N
ENSMGAG00000007619 Meleagris gallopavo ENSMGAG00000007619 N
ENSMPUG00000008220 Mustela putorius furo ENSMPUG00000008220 N
Zfpm1 Mus musculus ENSMUSG00000049577 N
Myotis_brandtii_ZFPM1_10035266 Myotis brandtii Myotis_brandtii_ZFPM1_10035266 N
ENSMLUG00000029422 Myotis lucifugus ENSMLUG00000029422 N
Ogr16761 Ophisaurus gracilis Ogr16761 N
ZFPM1 Otolemur garnettii ENSOGAG00000028472 N
ENSPANG00000005497 Papio anubis ENSPANG00000005497 N
Pvit_16331 Pogona vitticeps Pvit_16331 N
ENSPPYG00000007637 Pongo abelii ENSPPYG00000007637 N
ZFPM1 Pteropus vampyrus ENSPVAG00000005587 N
Zfpm1 Rattus norvegicus ENSRNOG00000043077 N
ENSTGUG00000007708 Taeniopygia guttata ENSTGUG00000007708 N
ZFPM1 Tursiops truncatus ENSTTRG00000014484 N