cassava11118.m1 (Manihot esculenta)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 cassava11118.m1 T246433_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD23
M06964_2.00 		Arabidopsis thaliana
NGCGNDRAWNNCGCN
NGCGNNWTYHNCGCN		 Dap-seq
OMalley et al.(2016)
LBD23_col_a 		0.737 0.737
LBD23
M06965_2.00 		Arabidopsis thaliana
DGCGDDRRWNNCGCN
NGCGNNWYYHHCGCH		 Dap-seq
OMalley et al.(2016)
LBD23_colamp_a 		0.737 0.737
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava11118.m1 LOB 5 103

Links

Other LOB family TFs
Other Manihot esculenta TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000010194 Ailuropoda melanoleuca ENSAMEG00000010194 N
Alligator_sinensis_CCG012013.1 Alligator sinensis Alligator_sinensis_CCG012013.1 N
ENSAPLG00000015688 Anas platyrhynchos ENSAPLG00000015688 N
BAZ2B Anolis carolinensis ENSACAG00000010585 N
Afo_R003860 Aptenodytes forsteri Afo_R003860 N
ENSAMXG00000004622 Astyanax mexicanus ENSAMXG00000004622 N
ENSAMXG00000009932 Astyanax mexicanus ENSAMXG00000009932 N
ENSBTAP00000053510-D1 Bos grunniens ENSBTAP00000053510-D1 N
BAZ2B Bos taurus ENSBTAG00000020654 N
BAZ2B Callithrix jacchus ENSCJAG00000015052 N
Aan_R012052 Calypte anna Aan_R012052 N
BAZ2B Canis familiaris ENSCAFG00000009433 N
BAZ2B Cavia porcellus ENSCPOG00000015233 N
ENSCSAG00000015843 Chlorocebus sabaeus ENSCSAG00000015843 N
BAZ2B Choloepus hoffmanni ENSCHOG00000007941 N
BAZ2B Danio rerio ENSDARG00000082979 N
baz2ba Danio rerio ENSDARG00000057782 N
BAZ2B Dasypus novemcinctus ENSDNOG00000006145 N
Baz2b Dipodomys ordii ENSDORG00000005595 N
BAZ2B Equus caballus ENSECAG00000012235 N
BAZ2B Felis catus ENSFCAG00000007573 N
ENSFALG00000003242 Ficedula albicollis ENSFALG00000003242 N
BAZ2B Gallus gallus ENSGALG00000012579 N
Gfo_R005657 Geospiza fortis Gfo_R005657 N
BAZ2B Homo sapiens ENSG00000123636 N
ENSLACG00000002050 Latimeria chalumnae ENSLACG00000002050 N
ENSLOCG00000006024 Lepisosteus oculatus ENSLOCG00000006024 N
BAZ2B Loxodonta africana ENSLAFG00000014380 N
BAZ2B Macaca mulatta ENSMMUG00000006182 N
BAZ2B Meleagris gallopavo ENSMGAG00000012953 N
BAZ2B Microcebus murinus ENSMICG00000013967 N
BAZ2B Monodelphis domestica ENSMODG00000005005 N
ENSMPUG00000000490 Mustela putorius furo ENSMPUG00000000490 N
Baz2b Mus musculus ENSMUSG00000026987 N
Myotis_brandtii_BAZ2B_10035557 Myotis brandtii Myotis_brandtii_BAZ2B_10035557 N
BAZ2B Myotis lucifugus ENSMLUG00000001182 N
ENSNLEG00000001067 Nomascus leucogenys ENSNLEG00000001067 N
Ogr09813 Ophisaurus gracilis Ogr09813 N
ENSONIG00000008939 Oreochromis niloticus ENSONIG00000008939 N
BAZ2B Ornithorhynchus anatinus ENSOANG00000006146 N
BAZ2B Oryctolagus cuniculus ENSOCUG00000015150 N
ENSOARG00000007352 Ovis aries ENSOARG00000007352 N
BAZ2B Pan troglodytes ENSPTRG00000012563 N
ENSPANG00000009095 Papio anubis ENSPANG00000009095 N
ENSPSIG00000013064 Pelodiscus sinensis ENSPSIG00000013064 N
ENSPFOG00000015860 Poecilia formosa ENSPFOG00000015860 N
ENSPFOG00000024462 Poecilia formosa ENSPFOG00000024462 N
Pvit_15950 Pogona vitticeps Pvit_15950 N
ENSPPYG00000012872 Pongo abelii ENSPPYG00000012872 N
BAZ2B Pteropus vampyrus ENSPVAG00000013042 N
Baz2b Rattus norvegicus ENSRNOG00000056984 N
BAZ2B Sorex araneus ENSSARG00000004075 N
BAZ2B Sus scrofa ENSSSCG00000015882 N
BAZ2B Taeniopygia guttata ENSTGUG00000012233 N
baz2ba Takifugu rubripes ENSTRUG00000017174 N
ENSTSYG00000001627 Tarsius syrichta ENSTSYG00000001627 N
baz2ba Tetraodon nigroviridis ENSTNIG00000009472 N
BAZ2B Tupaia belangeri ENSTBEG00000016991 N
BAZ2B Tursiops truncatus ENSTTRG00000001866 N
baz2b Xenopus tropicalis XB-GENE-964622 N
XP_002933311 Xenopus tropicalis XP_002933311 N
XP_002933312 Xenopus tropicalis XP_002933312 N