Carubv10018979m.g (Capsella rubella)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Carubv10018979m.g T246775_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD23
M06964_2.00 		Arabidopsis thaliana
NGCGNDRAWNNCGCN
NGCGNNWTYHNCGCN		 Dap-seq
OMalley et al.(2016)
LBD23_col_a 		0.919 0.919
LBD23
M06965_2.00 		Arabidopsis thaliana
DGCGDDRRWNNCGCN
NGCGNNWYYHHCGCH		 Dap-seq
OMalley et al.(2016)
LBD23_colamp_a 		0.919 0.919
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10018979m LOB 5 103

Links

Other LOB family TFs
Other Capsella rubella TFs

18 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI001286 Acyrthosiphon pisum ACYPI001286 N
AAEL017240 Aedes aegypti AAEL017240 N
AALB004335 Anopheles albimanus AALB004335 N
AARA002939 Anopheles arabiensis AARA002939 N
ACHR009681 Anopheles christyi ACHR009681 N
ACOM037721 Anopheles coluzzii ACOM037721 N
ACUA020558 Anopheles culicifacies ACUA020558 N
ADAC010555 Anopheles darlingi ADAC010555 N
ADIR009822 Anopheles dirus ADIR009822 N
AEPI007527 Anopheles epiroticus AEPI007527 N
AFAF016941 Anopheles farauti AFAF016941 N
AFUN010125 Anopheles funestus AFUN010125 N
AGAP005244 Anopheles gambiae AGAP005244 N
AMAM019783 Anopheles maculatus AMAM019783 N
AMEC009060 Anopheles melas AMEC009060 N
AMEM011054 Anopheles merus AMEM011054 N
AMIN011583 Anopheles minimus AMIN011583 N
AQUA005957 Anopheles quadriannulatus AQUA005957 N
ASTEI05998 Anopheles stephensi ASTEI05998 N
GB53296 Apis mellifera GB53296 N
Cflo_11724--NP_001011602.1_APIME Camponotus floridanus Cflo_11724--NP_001011602.1_APIME N
CLEC025389 Cimex lectularius CLEC025389 N
CpipJ_CPIJ013751 Culex pipiens CpipJ_CPIJ013751 N
CPIJ013751 Culex quinquefasciatus CPIJ013751 N
KGM_10298 Danaus plexippus KGM_10298 N
YQE_09795 Dendroctonus ponderosae YQE_09795 N
GF13768 Drosophila ananassae FBgn0090795 N
GG20137 Drosophila erecta FBgn0112331 N
GH21259 Drosophila grimshawi FBgn0128721 N
psq Drosophila melanogaster FBgn0263102 N
GI19337 Drosophila mojavensis FBgn0142075 N
GL17296 Drosophila persimilis FBgn0154899 N
GA30443 Drosophila pseudoobscura FBgn0264580 N
GJ22216 Drosophila virilis FBgn0209329 N
GK10716 Drosophila willistoni FBgn0212729 N
GE12825 Drosophila yakuba FBgn0230545 N
Hsal_00649--NP_001011602.1_APIME Harpegnathos saltator Hsal_00649--NP_001011602.1_APIME N
HMEL010188 Heliconius melpomene HMEL010188 N
LDEC000447 Leptinotarsa decemlineata LDEC000447 N
MESCA001635 Megaselia scalaris MESCA001635 N
MDOA013217 Musca domestica MDOA013217 N
NV10789 Nasonia vitripennis NV10789 N
PHUM042120 Pediculus humanus PHUM042120 N
RPRC012968 Rhodnius prolixus RPRC012968 N
SINV11439 Solenopsis invicta SINV11439 N
TC003349 Tribolium castaneum TC003349 N