Cagra.1504s0056 (Capsella grandiflora)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Cagra.1504s0056 T250606_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G05550
M06978_2.00 		Arabidopsis thaliana
HNDYCGCCGGMRWND
HNWYKCCGGCGRHND		 Dap-seq
OMalley et al.(2016)
AT5G05550_col_a 		0.875 0.794
AT5G05550
M06979_2.00 		Arabidopsis thaliana
HYNYCGCCGGARWHD
HDWYTCCGGCGRNRD		 Dap-seq
OMalley et al.(2016)
AT5G05550_colamp_a 		0.875 0.794
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1504s0056.1.p MADF 33 107

Links

Other MADF family TFs
Other Capsella grandiflora TFs

16 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
EHEL_101500 Encephalitozoon hellem EHEL_101500 I
EROM_101370 Encephalitozoon romaleae EROM_101370 I
EVEC_0000876401 Enterobius vermicularis EVEC_0000876401 N
NCER_101346 Nosema ceranae NCER_101346 I