Ciclev10010595m.g (Citrus clementina)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Ciclev10010595m.g T250641_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS02G0104500
M02271_2.00 		Oryza sativa
NDGTAAWWHN
NDWWTTACHN		 PBM
Weirauch et al.(2014)
pTH8719 		0.948 0.825
OS02G0104500
M02272_2.00 		Oryza sativa
NDGTAAWWHN
NDWWTTACHN		 PBM
Weirauch et al.(2014)
pTH9273 		0.948 0.825
PK15172.1
M01263_2.00 		Cannabis sativa
NNNGTWAHWN
NWDTWACNNN		 PBM
Lambert et al.(2019)
pTH10125 		0.886 0.698
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10010595m MADF 412 477

Links

Other MADF family TFs
Other Citrus clementina TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCCEY_11797 Ancylostoma ceylanicum ANCCEY_11797 I 0.000
ACOC_0000878601 Angiostrongylus costaricensis ACOC_0000878601 I 0.000
ASIM_0001248901 Anisakis simplex ASIM_0001248901 I 0.000
ASU_04764 Ascaris suum ASU_04764 I 0.000
BXY_0004500 Bursaphelenchus xylophilus BXY_0004500 I 0.000
CBG18895 Caenorhabditis briggsae CBG18895 N 0.000
dmd-7 Caenorhabditis elegans WBGene00019521 N 0.000
CJA06642 Caenorhabditis japonica CJA06642 N 0.000
CRE30862 Caenorhabditis remanei CRE30862 N 0.000
nDi.2.2.2.g06479 Dirofilaria immitis nDi.2.2.2.g06479 N 0.000
EVEC_0001300201 Enterobius vermicularis EVEC_0001300201 I 0.000
GPLIN_000574100 Globodera pallida GPLIN_000574100 N 0.000
HCOI00602900 Haemonchus contortus HCOI00602900 I 0.000
HCOI01956800 Haemonchus contortus HCOI01956800 I 0.000
Hba_20459 Heterorhabditis bacteriophora Hba_20459 I 0.000
snap_masked-nMf.1.1.scaf16852-processed-gene-0.2 Meloidogyne floridensis snap_masked-nMf.1.1.scaf16852-processed-gene-0.2 N 0.000
MhA1_Contig1400.frz3.gene1 Meloidogyne hapla MhA1_Contig1400.frz3.gene1 N 0.000
NECAME_08769 Necator americanus NECAME_08769 I 0.000
NBR_0000982201 Nippostrongylus brasiliensis NBR_0000982201 I 0.000
OESDEN_12332 Oesophagostomum dentatum OESDEN_12332 I 0.000
OFLC_0001397801 Onchocerca flexuosa OFLC_0001397801 N 0.000
WBGene00240965 Onchocerca volvulus WBGene00240965 N 0.000
scaffold54-EXSNAP2012.9 Pristionchus exspectatus scaffold54-EXSNAP2012.9 I 0.000
PPA11400 Pristionchus pacificus PPA11400 I 0.000
RSKR_0000795800 Rhabditophanes kr3021 RSKR_0000795800 N 0.000
L596_g25360 Steinernema carpocapsae L596_g25360 I 0.000
L889_g19153 Steinernema feltiae L889_g19153 I 0.000
L893_g6833 Steinernema glaseri L893_g6833 I 0.000
L898_g6334 Steinernema monticolum L898_g6334 I 0.000
L892_g27590 Steinernema scapterisci L892_g27590 I 0.000
SPAL_0001661800 Strongyloides papillosus SPAL_0001661800 N 0.000
SSTP_0000497600 Strongyloides stercoralis SSTP_0000497600 N 0.000
SVE_0126800 Strongyloides venezuelensis SVE_0126800 N 0.000
SMUV_0001084001 Syphacia muris SMUV_0001084001 I 0.000
WUBG_01942 Wuchereria bancrofti WUBG_01942 N 0.000