Pavir.J13370 (Panicum virgatum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Pavir.J13370 T250826_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G10030
M01258_2.00 		Arabidopsis thaliana
NRMCGTTAWNN
NNWTAACGKYN		 PBM
Lambert et al.(2019)
pTH11538 		0.839 0.583
AT3G10030
M06971_2.00 		Arabidopsis thaliana
HRHCKCCGTTANND
HNNTAACGGMGDYD		 Dap-seq
OMalley et al.(2016)
AT3G10030_col_a 		0.839 0.583
AT3G10030
M06972_2.00 		Arabidopsis thaliana
HWRHMKCCGTTAAHD
HDTTAACGGMKDYWD		 Dap-seq
OMalley et al.(2016)
AT3G10030_colamp_a 		0.839 0.583
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J13370.1.p MADF 131 209

Links

Other MADF family TFs
Other Panicum virgatum TFs

64 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PVAR5_8893 Byssochlamys spectabilis PVAR5_8893 N
A1O3_05136 Capronia epimyces A1O3_05136 N
PV07_04827 Cladophialophora immunda PV07_04827 N
PV10_00419 Exophiala mesophila PV10_00419 N
Z517_04920 Fonsecaea pedrosoi Z517_04920 N