Thhalv10020471m.g (Eutrema salsugineum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Thhalv10020471m.g T250873_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G10030
M01258_2.00 		Arabidopsis thaliana
NRMCGTTAWNN
NNWTAACGKYN		 PBM
Lambert et al.(2019)
pTH11538 		0.967 0.932
AT3G10030
M06971_2.00 		Arabidopsis thaliana
HRHCKCCGTTANND
HNNTAACGGMGDYD		 Dap-seq
OMalley et al.(2016)
AT3G10030_col_a 		0.967 0.932
AT3G10030
M06972_2.00 		Arabidopsis thaliana
HWRHMKCCGTTAAHD
HDTTAACGGMKDYWD		 Dap-seq
OMalley et al.(2016)
AT3G10030_colamp_a 		0.967 0.932
PK04914.1
M01262_2.00 		Cannabis sativa
DCCGTYAN
NTRACGGH		 PBM
Lambert et al.(2019)
pTH10098 		0.944 0.797
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10020471m MADF 160 241
Thhalv10020477m MADF 160 241

Links

Other MADF family TFs
Other Eutrema salsugineum TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCP24 Arabidopsis lyrata fgenesh2_kg.1__3195__AT1G30210.2 D
TCP24 Arabidopsis thaliana AT1G30210 D
Bostr.15697s0315 Boechera stricta Bostr.15697s0315 I
Bo5g062580 Brassica oleracea Bo5g062580 I
Bo6g107240 Brassica oleracea Bo6g107240 I
Bo9g052090 Brassica oleracea Bo9g052090 N
Bra032365 Brassica rapa Bra032365 I
Cla020670 Citrullus lanatus Cla020670 I
Ciclev10012612m.g Citrus clementina Ciclev10012612m.g I
Ciclev10007109m.g Citrus clementina Ciclev10007109m.g I
orange1.1g047495m.g Citrus sinensis orange1.1g047495m.g I
Eucgr.G02354 Eucalyptus grandis Eucgr.G02354 I
Thhalv10008175m.g Eutrema salsugineum Thhalv10008175m.g I
Thhalv10018773m.g Eutrema salsugineum Thhalv10018773m.g I
gene10333-v1.0-hybrid Fragaria vesca gene10333-v1.0-hybrid I
Lus10042962.g Linum usitatissimum Lus10042962.g I
Lus10038512.g Linum usitatissimum Lus10038512.g I
Lus10017856.g Linum usitatissimum Lus10017856.g I
chr3.CM0282.560.nc Lotus japonicus chr3.CM0282.560.nc I
MTR_7g015010 Medicago truncatula MTR_7g015010 I
mgf014960m Mimulus guttatus mgf014960m I
mgf025386m Mimulus guttatus mgf025386m I
ORGLA07G0028600 Oryza glaberrima ORGLA07G0028600 I
OGLUM07G02670 Oryza glumaepatula OGLUM07G02670 I
OGLUM02G33090 Oryza glumaepatula OGLUM02G33090 I
BGIOSGA025162 Oryza indica BGIOSGA025162 I
ONIVA07G01330 Oryza nivara ONIVA07G01330 I
ORUFI07G03030 Oryza rufipogon ORUFI07G03030 I
ORUFI02G34160 Oryza rufipogon ORUFI02G34160 I
OS07G0152000 Oryza sativa OS07G0152000 I
Solyc02g089830.1 Solanum lycopersicum Solyc02g089830.1 I
PGSC0003DMG400010045 Solanum tuberosum PGSC0003DMG400010045 I
BRC1 Vitis vinifera VIT_17s0000g04180 I