AGL55 (Arabidopsis thaliana)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 AT1G60920 T252854_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL55
M06983_2.00		 Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
AGL55_col_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G60920.1 MADS box 12 64

Links

Other MADS box family TFs
Other Arabidopsis thaliana TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL55 Arabidopsis lyrata fgenesh2_kg.2__370__AT1G60920.1 I 0.812
AGL56 Arabidopsis lyrata fgenesh2_kg.2__374__AT1G60880.1 I 0.833
AGL56 Arabidopsis thaliana AT1G60880 I 0.708
Bostr.10040s0123 Boechera stricta Bostr.10040s0123 I 0.792
Bo9g043470 Brassica oleracea Bo9g043470 I 0.750
Bo9g043530 Brassica oleracea Bo9g043530 I 0.729
Bra027116 Brassica rapa Bra027116 I 0.771
Bra040965 Brassica rapa Bra040965 I 0.729
Carubv10021715m.g Capsella rubella Carubv10021715m.g I 0.729
Thhalv10023813m.g Eutrema salsugineum Thhalv10023813m.g I 0.792
Thhalv10023871m.g Eutrema salsugineum Thhalv10023871m.g I 0.729