OB01G48280 (Oryza brachyantha)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 OB01G48280 T254885_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MADS2
M10966_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_02 		1.000 1.000
Q9AR49_MAIZE
M10980_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M29_01 		0.896 0.896
M17_MAIZE
M10959_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M17_01 		0.792 0.792
MAD14_ORYSJ
M10960_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS14_01 		0.792 0.792
Q84LI3_WHEAT
M10979_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAVRT1_01 		0.792 0.792
O82128_WHEAT
M10965_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WAP1_01 		0.792 0.792
Q9LEI3_HORVU
M10985_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM3_01 		0.771 0.771
MLOC_61901
M10964_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM8_01 		0.771 0.771
Q9ATE8_PETHY
M11011_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP21_01 		0.771 0.771
Q40591_TOBAC
M11002_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_03 		0.771 0.771
O82699_MALDO
M11022_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_01 		0.771 0.771
Q8GT99_TOBAC
M11006_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_02 		0.771 0.771
Q9FR84_MAIZE
M10981_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_03 		0.771 0.771
Q9SBQ1_PETHY
M11017_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PFG_01 		0.771 0.771
Q41829_MAIZE
M10977_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ZAP1_02 		0.771 0.771
AGL15
M06992_2.00 		Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN
NTTTCYWHWTTDGGWAANW		 Dap-seq
OMalley et al.(2016)
AGL15_col_a 		0.750 0.750
AGL15
M06993_2.00 		Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH
DDNTTTCYHHWTTDGGWAANH		 Dap-seq
OMalley et al.(2016)
AGL15_colamp_a 		0.750 0.750
AGL16
M06987_2.00 		Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA		 Dap-seq
OMalley et al.(2016)
AGL16_col_a 		0.750 0.750
AGL16
M06988_2.00 		Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW		 Dap-seq
OMalley et al.(2016)
AGL16_colamp_a 		0.750 0.750
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.750 0.750
AGL1
M02694_2.00 		Arabidopsis thaliana
NDTDCCWWWWNDGGWAHN
NDTWCCHNWWWWGGHAHN		 SELEX
Mathelier et al.(2014)
MA0585.1 		0.750 0.750
AP1
M08144_2.00 		Arabidopsis thaliana
MYAAAAAWRGAAA
TTTCYWTTTTTRK		 ChIP-seq
Mathelier et al.(2014)
MA0940.1 		0.750 0.750
AGL1
M10920_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL1_01 		0.750 0.750
AGL1
M10921_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL1_02 		0.750 0.750
AGL15
M10927_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_01 		0.750 0.750
AGL15
M10928_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_02 		0.750 0.750
Q7X9I6_MALDO
M11023_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS12_02 		0.750 0.750
MADS15
M10972_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS15_01 		0.750 0.750
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.750 0.750
Q9FVN1_MAIZE
M10982_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_03 		0.750 0.750
Q9ZRA5_MALDO
M11030_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_04 		0.750 0.750
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.750 0.750
AP1
M10905_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSA_Q2 		0.750 0.750
SHP2
M10914_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SHP2_01 		0.750 0.750
AG
M02695_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHADN
NHTDCCHNWTWWGGWAAD		 SELEX
Mathelier et al.(2014)
MA0005.2 		0.729 0.729
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.729 0.729
AG
M10923_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN
NHTDCCHNWTWWGGWAAD		 Transfac
Matys et al.(2006)
P$AG_01 		0.729 0.729
AG
M10924_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_02 		0.729 0.729
AG
M10925_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_03 		0.729 0.729
AG_TOBAC
M10995_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG1_02 		0.729 0.729
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.729 0.729
AG
M10926_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_Q2 		0.729 0.729
FBP1_PETHY
M10996_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP1_01 		0.729 0.729
Q9ATE9_PETHY
M11012_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP20_01 		0.729 0.729
Q9ATE7_PETHY
M11010_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP22_01 		0.729 0.729
Q9ATE3_PETHY
M11008_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP28_01 		0.729 0.729
Q08711_PETHY
M10999_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP6_01 		0.729 0.729
Q9ATF1_PETHY
M11013_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP9_01 		0.729 0.729
MADS3_ORYSJ
M10963_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_01 		0.729 0.729
AG_PETHY
M10994_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_02 		0.729 0.729
Q9ST54_MALDO
M11029_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_04 		0.729 0.729
O82697_MALDO
M11020_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_01 		0.729 0.729
AGL13
M06989_2.00 		Arabidopsis thaliana
WTWCYHAAAAWRGWAADW
WHTTWCYWTTTTDRGWAW		 Dap-seq
OMalley et al.(2016)
AGL13_col_b 		0.708 0.708
squamosa
M02697_2.00 		Antirrhinum majus
MYAWAWAWRGHAAN
NTTDCYWTWTWTRK		 SELEX
Mathelier et al.(2014)
MA0082.1 		0.708 0.708
SEP1
M02696_2.00 		Arabidopsis thaliana
NDWNCCAWWWWTRGHAWB
VWTDCYAWWWWTGGNWHN		 SELEX
Mathelier et al.(2014)
MA0584.1 		0.708 0.708
SEP3
M08143_2.00 		Arabidopsis thaliana
CCAAAAAWRGN
NCYWTTTTTGG		 ChIP-seq
Mathelier et al.(2014)
MA0563.1 		0.708 0.708
AGL12
M10906_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL12_01 		0.708 0.708
SEP1
M10929_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL2_01 		0.708 0.708
SEP1
M10930_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL2_02 		0.708 0.708
SEP3
M10902_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL9_01 		0.708 0.708
AGL9_PETHY
M10993_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP2_01 		0.708 0.708
Q9ATE6_PETHY
M11009_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP23_01 		0.708 0.708
FBP24_PETHY
M10997_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP24_01 		0.708 0.708
Q9ATE2_PETHY
M11007_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP29_01 		0.708 0.708
Q9ATF3_PETHY
M11015_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP4_01 		0.708 0.708
O82084_MALDO
M11018_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_01 		0.708 0.708
Q6UGQ8_PETHY
M11005_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS12_01 		0.708 0.708
Q8VWZ3_MALDO
M11025_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS14_02 		0.708 0.708
Q8VWZ2_MALDO
M11024_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS15_02 		0.708 0.708
MADS18
M10973_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS18_01 		0.708 0.708
Q9LM09_TOBAC
M11016_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS4_01 		0.708 0.708
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.708 0.708
O82695_MALDO
M11019_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS5_01 		0.708 0.708
MADS7
M10975_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_02 		0.708 0.708
MADS8
M10976_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS8_01 		0.708 0.708
Q9SBA6_MALDO
M11028_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS8_02 		0.708 0.708
Q38742_ANTMA
M11000_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SQUA_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OB01G48280.1 MADS box 10 57

Links

Other MADS box family TFs
Other Oryza brachyantha TFs

1267 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI007360 Acyrthosiphon pisum ACYPI007360 N
ACYPI061631 Acyrthosiphon pisum ACYPI061631 N
F775_52178 Aegilops tauschii F775_52178 N
ANCCEY_11186 Ancylostoma ceylanicum ANCCEY_11186 N
ANCDUO_22746 Ancylostoma duodenale ANCDUO_22746 N
AALB003620 Anopheles albimanus AALB003620 N
AATE015248 Anopheles atroparvus AATE015248 N
AFAF010529 Anopheles farauti AFAF010529 N
AFAF019448 Anopheles farauti AFAF019448 N
AMAM017394 Anopheles maculatus AMAM017394 N
AMEM018396 Anopheles merus AMEM018396 N
ASTEI04298 Anopheles stephensi ASTEI04298 N
Afo_R004424 Aptenodytes forsteri Afo_R004424 N
Afo_R004423 Aptenodytes forsteri Afo_R004423 N
ACEP14712 Atta cephalotes ACEP14712 N
BGIBMGA000762 Bombyx mori BGIBMGA000762 N
e_gw.85.119.1 Branchiostoma floridae e_gw.85.119.1 N
e_gw.543.9.1 Branchiostoma floridae e_gw.543.9.1 N
Brh_R009091 Buceros rhinoceros Brh_R009091 N
Brh_R009090 Buceros rhinoceros Brh_R009090 N
CBG11788 Caenorhabditis briggsae CBG11788 N
CBG27683 Caenorhabditis briggsae CBG27683 N
Cmyd_10018206 Chelonia mydas Cmyd_10018206 N
Cmyd_10006636 Chelonia mydas Cmyd_10006636 N
CLEC007188 Cimex lectularius CLEC007188 N
CGI_10013606 Crassostrea gigas CGI_10013606 N
CGOC_0001416801 Cylicostephanus goldi CGOC_0001416801 N
YQE_02582 Dendroctonus ponderosae YQE_02582 N
DILT_0001226501 Diphyllobothrium latum DILT_0001226501 I
DILT_0000834901 Diphyllobothrium latum DILT_0000834901 I
DILT_0000246201 Diphyllobothrium latum DILT_0000246201 N
scro Drosophila melanogaster FBgn0028993 D
HHEX Echinops telfairi ENSETEG00000009524 N
ENSECAG00000023678 Equus caballus ENSECAG00000023678 I
ENSEEUG00000003019 Erinaceus europaeus ENSEEUG00000003019 N
D915_09728 Fasciola hepatica D915_09728 N
ENSGMOG00000004079 Gadus morhua ENSGMOG00000004079 N
Gfo_R001742 Geospiza fortis Gfo_R001742 N
Gfo_R001743 Geospiza fortis Gfo_R001743 N
GPUH_0000280301 Gongylonema pulchrum GPUH_0000280301 N
Hsal_00498--XP_394578.2_APIME Harpegnathos saltator Hsal_00498--XP_394578.2_APIME N
Hba_18080 Heterorhabditis bacteriophora Hba_18080 N
HmN_000453400 Hymenolepis microstoma HmN_000453400 I
HmN_000683200 Hymenolepis microstoma HmN_000683200 N
HNAJ_0000742201 Hymenolepis nana HNAJ_0000742201 N
ISCW011755 Ixodes scapularis ISCW011755 N
ENSLOCG00000004278 Lepisosteus oculatus ENSLOCG00000004278 N
MhA1_Contig864.frz3.gene5 Meloidogyne hapla MhA1_Contig864.frz3.gene5 N
MhA1_Contig1149.frz3.gene7 Meloidogyne hapla MhA1_Contig1149.frz3.gene7 N
MCOS_0000074401 Mesocestoides corti MCOS_0000074401 N
NECAME_06897 Necator americanus NECAME_06897 N
ENSOPRG00000015148 Ochotona princeps ENSOPRG00000015148 N
SNAPOd2T00004995001 Oikopleura dioica SNAPOd2T00004995001 N
Ogr05812 Ophisaurus gracilis Ogr05812 N
Ogr00063 Ophisaurus gracilis Ogr00063 I
ENSOANG00000004408 Ornithorhynchus anatinus ENSOANG00000004408 N
scaffold28-EXSNAP2012.55 Pristionchus exspectatus scaffold28-EXSNAP2012.55 N
Ppa-ceh-28 Pristionchus pacificus PPA19627 N
PXEA_0000454701 Protopolystoma xenopodis PXEA_0000454701 N
PXEA_0002847001 Protopolystoma xenopodis PXEA_0002847001 N
nRc.2.0.1.g41491 Romanomermis culicivorax nRc.2.0.1.g41491 N
SSLN_0001021301 Schistocephalus solidus SSLN_0001021301 I
Sjc_0057900 Schistosoma japonicum Sjc_0057900 N
SBAD_0000184901 Soboliphyme baturini SBAD_0000184901 I
SINV24463 Solenopsis invicta SINV24463 N
SPER_0002786601 Spirometra erinaceieuropaei SPER_0002786601 N
SPER_0003017401 Spirometra erinaceieuropaei SPER_0003017401 N
L892_g18619 Steinernema scapterisci L892_g18619 N
SPU_019656 Strongylocentrotus purpuratus SPU_019656 N
SVUK_0001310301 Strongylus vulgaris SVUK_0001310301 N
D918_02763 Trichuris suis D918_02763 N
Tal_R010537 Tyto alba Tal_R010537 N
Tal_R010536 Tyto alba Tal_R010536 N
nkx2-4 Xenopus tropicalis XB-GENE-487481 I