CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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VIT_14s0060g00300
(
Vitis vinifera
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
VIT_14s0060g00300
T256795_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL80
M06994_2.00
Arabidopsis thaliana
TCACCA
TGGTGA
Dap-seq
OMalley et al.(2016)
FEM111_col_a
0.854
0.854
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
VIT_14s0060g00300.t01
MADS box
10
58
YITNDSARKATFKKRKKGLMKKVSELSTLCGIDACAILYSPYDSQPEVW
Links
Other
MADS box
family TFs
Other
Vitis vinifera
TFs
153 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
nAv.1.0.1.g02876
Acanthocheilonema viteae
nAv.1.0.1.g02876
N
ANCDUO_19967
Ancylostoma duodenale
ANCDUO_19967
N
ASIM_0001677501
Anisakis simplex
ASIM_0001677501
N
Bm3899
Brugia malayi
Bm3899
N
CBN06012
Caenorhabditis brenneri
CBN06012
N
CBN00758
Caenorhabditis brenneri
CBN00758
N
CBG02231
Caenorhabditis briggsae
CBG02231
N
tag-68
Caenorhabditis elegans
WBGene00006445
N
CJA12147
Caenorhabditis japonica
CJA12147
N
CRE29609
Caenorhabditis remanei
CRE29609
N
DICVIV_00304
Dictyocaulus viviparus
DICVIV_00304
N
nDi.2.2.2.g08539
Dirofilaria immitis
nDi.2.2.2.g08539
N
EVEC_0000982901
Enterobius vermicularis
EVEC_0000982901
N
HCOI01584000
Haemonchus contortus
HCOI01584000
N
HPLM_0000720101
Haemonchus placei
HPLM_0000720101
N
nLs.2.1.2.g02844
Litomosoides sigmodontis
nLs.2.1.2.g02844
N
LOAG_18157
Loa loa
LOAG_18157
N
MhA1_Contig659.frz3.gene12
Meloidogyne hapla
MhA1_Contig659.frz3.gene12
N
Minc00757
Meloidogyne incognita
Minc00757
N
NECAME_05919
Necator americanus
NECAME_05919
N
PTRK_0001052400
Parastrongyloides trichosuri
PTRK_0001052400
N
RSKR_0000114000
Rhabditophanes kr3021
RSKR_0000114000
N
L596_g21063
Steinernema carpocapsae
L596_g21063
N
L889_g15246
Steinernema feltiae
L889_g15246
N
L893_g5132
Steinernema glaseri
L893_g5132
N
L898_g4344
Steinernema monticolum
L898_g4344
N
SPAL_0000096300
Strongyloides papillosus
SPAL_0000096300
N
SSTP_0000137400
Strongyloides stercoralis
SSTP_0000137400
N
TELCIR_17986
Teladorsagia circumcincta
TELCIR_17986
N
TELCIR_20778
Teladorsagia circumcincta
TELCIR_20778
N
TCLT_0000822701
Thelazia callipaeda
TCLT_0000822701
N
TCNE_0001786701
Toxocara canis
TCNE_0001786701
N
WUBG_00492
Wuchereria bancrofti
WUBG_00492
N