cassava38612.m1 (Manihot esculenta)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 cassava38612.m1 T257225_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava38612.m1 MADS box 10 55

Links

Other MADS box family TFs
Other Manihot esculenta TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_010_00024 Aquilegia coerulea Aquca_010_00024 I
fgenesh1_pg.C_scaffold_7000014 Arabidopsis lyrata fgenesh1_pg.C_scaffold_7000014 I
fgenesh2_kg.2__1918__AT1G76350.1 Arabidopsis lyrata fgenesh2_kg.2__1918__AT1G76350.1 I
fgenesh2_kg.2__24__AT1G64530.1 Arabidopsis lyrata fgenesh2_kg.2__24__AT1G64530.1 I
NLP6 Arabidopsis thaliana AT1G64530 I
NLP5 Arabidopsis thaliana AT1G76350 I
Bostr.18351s0175 Boechera stricta Bostr.18351s0175 I
Bostr.20129s0072 Boechera stricta Bostr.20129s0072 I
Bostr.25542s0020 Boechera stricta Bostr.25542s0020 I
Bostr.25993s0430 Boechera stricta Bostr.25993s0430 I
BRADI1G76340 Brachypodium distachyon BRADI1G76340 I
BRADI4G20730 Brachypodium distachyon BRADI4G20730 I
Bo4g194380 Brassica oleracea Bo4g194380 I
Bo6g120380 Brassica oleracea Bo6g120380 I
Bo7g061470 Brassica oleracea Bo7g061470 I
Bo9g032270 Brassica oleracea Bo9g032270 I
Bra012241 Brassica rapa Bra012241 I
Bra015758 Brassica rapa Bra015758 I
Bra040914 Brassica rapa Bra040914 I
PK00728.1 Cannabis sativa PK00728.1 I
PK12462.1 Cannabis sativa PK12462.1 I
Cagra.0805s0015 Capsella grandiflora Cagra.0805s0015 I
Cagra.1383s0021 Capsella grandiflora Cagra.1383s0021 I
Cagra.3706s0034 Capsella grandiflora Cagra.3706s0034 I
Carubv10004068m.g Capsella rubella Carubv10004068m.g I
Carubv10006357m.g Capsella rubella Carubv10006357m.g I
Carubv10012927m.g Capsella rubella Carubv10012927m.g I
Carubv10022595m.g Capsella rubella Carubv10022595m.g I
evm.TU.supercontig_9.328 Carica papaya evm.TU.supercontig_9.328 I
Ca_09832 Cicer arietinum Ca_09832 I
Ciclev10018669m.g Citrus clementina Ciclev10018669m.g I
Ciclev10027765m.g Citrus clementina Ciclev10027765m.g I
orange1.1g001774m.g Citrus sinensis orange1.1g001774m.g I
orange1.1g004975m.g Citrus sinensis orange1.1g004975m.g I
Eucgr.E01022 Eucalyptus grandis Eucgr.E01022 I
Thhalv10018128m.g Eutrema salsugineum Thhalv10018128m.g I
Thhalv10023271m.g Eutrema salsugineum Thhalv10023271m.g I
gene16194-v1.0-hybrid Fragaria vesca gene16194-v1.0-hybrid I
GLYMA02G48080 Glycine max GLYMA02G48080 I
GLYMA04G00210 Glycine max GLYMA04G00210 I
GLYMA06G00240 Glycine max GLYMA06G00240 I
GLYMA09G25230 Glycine max GLYMA09G25230 I
GLYMA11G13390 Glycine max GLYMA11G13390 I
GLYMA12G05390 Glycine max GLYMA12G05390 I
GLYMA14G00470 Glycine max GLYMA14G00470 I
Gorai.005G126000 Gossypium raimondii Gorai.005G126000 I
Gorai.008G041100 Gossypium raimondii Gorai.008G041100 I
Gorai.011G138700 Gossypium raimondii Gorai.011G138700 I
MLOC_13610 Hordeum vulgare MLOC_13610 I
LPERR01G07660 Leersia perrieri LPERR01G07660 I
LPERR03G02280 Leersia perrieri LPERR03G02280 I
Lus10003199.g Linum usitatissimum Lus10003199.g I
Lus10014428.g Linum usitatissimum Lus10014428.g I
Lus10023930.g Linum usitatissimum Lus10023930.g I
chr2.CM0102.390.nc Lotus japonicus chr2.CM0102.390.nc I
chr2.CM0904.130.nd Lotus japonicus chr2.CM0904.130.nd I
chr3.LjT23H01.20.nc Lotus japonicus chr3.LjT23H01.20.nc I
MDP0000132856 Malus domestica MDP0000132856 I
MDP0000239938 Malus domestica MDP0000239938 I
MDP0000246881 Malus domestica MDP0000246881 I
MDP0000265619 Malus domestica MDP0000265619 I
MDP0000788505 Malus domestica MDP0000788505 I
cassava7989.valid.m1 Manihot esculenta cassava7989.valid.m1 I
MTR_4g068000 Medicago truncatula MTR_4g068000 I
MTR_5g099060 Medicago truncatula MTR_5g099060 I
mgf013203m Mimulus guttatus mgf013203m I
GSMUA_Achr2G05790_001 Musa acuminata GSMUA_Achr2G05790_001 I
OBART01G08660 Oryza barthii OBART01G08660 I
OBART03G02480 Oryza barthii OBART03G02480 I
OBART04G17320 Oryza barthii OBART04G17320 I
OB01G18870 Oryza brachyantha OB01G18870 I
OB03G12460 Oryza brachyantha OB03G12460 I
OB04G24560 Oryza brachyantha OB04G24560 I
ORGLA01G0077900 Oryza glaberrima ORGLA01G0077900 I
ORGLA03G0022700 Oryza glaberrima ORGLA03G0022700 I
ORGLA04G0144400 Oryza glaberrima ORGLA04G0144400 I
ORGLA11G0080000 Oryza glaberrima ORGLA11G0080000 I
OGLUM01G09910 Oryza glumaepatula OGLUM01G09910 I
OGLUM03G02410 Oryza glumaepatula OGLUM03G02410 I
OGLUM11G08660 Oryza glumaepatula OGLUM11G08660 I
BGIOSGA003095 Oryza indica BGIOSGA003095 I
BGIOSGA011521 Oryza indica BGIOSGA011521 I
BGIOSGA016686 Oryza indica BGIOSGA016686 I
BGIOSGA034185 Oryza indica BGIOSGA034185 I
OLONG_004527 Oryza longistaminata OLONG_004527 I
OLONG_005878 Oryza longistaminata OLONG_005878 I
OLONG_006342 Oryza longistaminata OLONG_006342 I
OLONG_009319 Oryza longistaminata OLONG_009319 I
OMERI01G08690 Oryza meridionalis OMERI01G08690 I
OMERI03G02340 Oryza meridionalis OMERI03G02340 I
OMERI04G14630 Oryza meridionalis OMERI04G14630 I
OMERI11G08010 Oryza meridionalis OMERI11G08010 I
ONIVA01G11240 Oryza nivara ONIVA01G11240 I
ONIVA03G02090 Oryza nivara ONIVA03G02090 I
ONIVA04G15630 Oryza nivara ONIVA04G15630 I
ONIVA11G08980 Oryza nivara ONIVA11G08980 I
OPUNC01G08520 Oryza punctata OPUNC01G08520 I
OPUNC03G02270 Oryza punctata OPUNC03G02270 I
OPUNC04G15130 Oryza punctata OPUNC04G15130 I
ORUFI01G09470 Oryza rufipogon ORUFI01G09470 I
ORUFI03G02230 Oryza rufipogon ORUFI03G02230 I
ORUFI04G18750 Oryza rufipogon ORUFI04G18750 I
ORUFI11G09500 Oryza rufipogon ORUFI11G09500 I
NLP3 Oryza sativa OS01G0236700 I
NLP1 Oryza sativa OS03G0131100 I
OS04G0495800 Oryza sativa OS04G0495800 I
Pavir.Ga01502 Panicum virgatum Pavir.Ga01502 I
Pavir.Ia04472 Panicum virgatum Pavir.Ia04472 I
Pavir.J25840 Panicum virgatum Pavir.J25840 I
PDK_20s1462471g002 Phoenix dactylifera PDK_20s1462471g002 I
estExt_gwp_gw1.C_1280044 Physcomitrella patens estExt_gwp_gw1.C_1280044 I
POPTR_0001s10970 Populus trichocarpa POPTR_0001s10970 I
POPTR_0002s01060 Populus trichocarpa POPTR_0002s01060 I
POPTR_0003s14300 Populus trichocarpa POPTR_0003s14300 I
POPTR_0005s27310 Populus trichocarpa POPTR_0005s27310 I
Pm022106 Prunus mume Pm022106 I
PRUPE_ppa000933mg Prunus persica PRUPE_ppa000933mg I
30170.m014365 Ricinus communis 30170.m014365 I
SapurV1A.0016s0650 Salix purpurea SapurV1A.0016s0650 I
SapurV1A.0035s0170 Salix purpurea SapurV1A.0035s0170 I
SapurV1A.0059s0050 Salix purpurea SapurV1A.0059s0050 I
SapurV1A.0266s0390 Salix purpurea SapurV1A.0266s0390 I
SapurV1A.0374s0230 Salix purpurea SapurV1A.0374s0230 I
SapurV1A.0374s0240 Salix purpurea SapurV1A.0374s0240 I
SapurV1A.3634s0010 Salix purpurea SapurV1A.3634s0010 I
Si034133m.g Setaria italica Si034133m.g I
Solyc08g008410.2 Solanum lycopersicum Solyc08g008410.2 I
PGSC0003DMG401005796 Solanum tuberosum PGSC0003DMG401005796 I
PGSC0003DMG402012256 Solanum tuberosum PGSC0003DMG402012256 I
Sb01g048290 Sorghum bicolor Sb01g048290 I
Sb06g021370 Sorghum bicolor Sb06g021370 I
TCM_006453 Theobroma cacao TCM_006453 I
TCM_019949 Theobroma cacao TCM_019949 I
TCM_034391 Theobroma cacao TCM_034391 I
Traes_4AL_F5C91EC4A Triticum aestivum Traes_4AL_F5C91EC4A I
TRIUR3_22305 Triticum urartu TRIUR3_22305 I
VIT_03s0038g03710 Vitis vinifera VIT_03s0038g03710 I
GRMZM2G031398 Zea mays GRMZM2G031398 I
GRMZM2G042278 Zea mays GRMZM2G042278 I
GRMZM2G105004 Zea mays GRMZM2G105004 I
GRMZM2G109509 Zea mays GRMZM2G109509 I
GRMZM2G176655 Zea mays GRMZM2G176655 I