Cagra.1681s0033 (Capsella grandiflora)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Cagra.1681s0033 T257682_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL103
M10918_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G18650_01 		0.729 0.729
AGL78
M10932_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT5G65330_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1681s0033.1.p MADS box 40 87

Links

Other MADS box family TFs
Other Capsella grandiflora TFs

14 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CHGG_08197 Chaetomium globosum CHGG_08197 I 0.000
CFIO01_04511 Colletotrichum fioriniae CFIO01_04511 I 0.000
GLRG_08668 Colletotrichum graminicola GLRG_08668 I 0.000
CH063_11230 Colletotrichum higginsianum CH063_11230 I 0.000
Cob_03888 Colletotrichum orbiculare Cob_03888 I 0.000
e_gw1.2.156.1 Cryphonectria parasitica e_gw1.2.156.1 I 0.000
FGRRES_05157 Fusarium graminearum FGRRES_05157 I 0.000
FPSE_06556 Fusarium pseudograminearum FPSE_06556 I 0.000
NechaG92542 Fusarium solani NechaG92542 I 0.000
MYCTH_2311492 Myceliophthora thermophila MYCTH_2311492 I 0.000
col-21 Neurospora crassa NCU03489 D 0.000
NEUTE1DRAFT_66044 Neurospora tetrasperma NEUTE1DRAFT_66044 I 0.000
PODANS_6_4250 Podospora anserina PODANS_6_4250 I 0.000
SMAC_07224 Sordaria macrospora SMAC_07224 I 0.000
S40288_01677 Stachybotrys chartarum S40288_01677 N 0.000
S40285_03084 Stachybotrys chlorohalonata S40285_03084 N 0.000
UCRPA7_8227 Togninia minima UCRPA7_8227 I 0.000
VHEMI05522 Torrubiella hemipterigena VHEMI05522 I 0.000
TRIATDRAFT_315339 Trichoderma atroviride TRIATDRAFT_315339 I 0.000
TRIVIDRAFT_229893 Trichoderma virens TRIVIDRAFT_229893 I 0.000
VDAG_07012 Verticillium dahliae VDAG_07012 I 0.000