Carubv10015986m.g (Capsella rubella)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Carubv10015986m.g T257779_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL103
M10918_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G18650_01 		0.729 0.729
AGL78
M10932_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT5G65330_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10015986m MADS box 38 85

Links

Other MADS box family TFs
Other Capsella rubella TFs

14 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANIA_04077 Aspergillus nidulans CADANIAG00004604 I
EURHEDRAFT_458005 Aspergillus ruber EURHEDRAFT_458005 I
ATEG_03075 Aspergillus terreus CADATEAG00010055 I
PVAR5_6448 Byssochlamys spectabilis PVAR5_6448 I
CHGG_02890 Chaetomium globosum CHGG_02890 I
CTHT_0024110 Chaetomium thermophilum CTHT_0024110 I
CFIO01_11469 Colletotrichum fioriniae CFIO01_11469 I
CGGC5_5606 Colletotrichum gloeosporioides CGGC5_5606 I
GLRG_03674 Colletotrichum graminicola GLRG_03674 I
CH063_07180 Colletotrichum higginsianum CH063_07180 I
Cob_12532 Colletotrichum orbiculare Cob_12532 I
W97_02650 Coniosporium apollinis W97_02650 I
DOTSEDRAFT_68166 Dothistroma septosporum DOTSEDRAFT_68166 I
EPUS_04985 Endocarpon pusillum EPUS_04985 I
CMQ_7525 Grosmannia clavigera CMQ_7525 N
MYCTH_2304200 Myceliophthora thermophila MYCTH_2304200 I
NFIA_019220 Neosartorya fischeri CADNFIAG00000884 I
NCU00392 Neurospora crassa NCU00392 D
estExt_Genewise1.C_50564 Neurospora discreta estExt_Genewise1.C_50564 I
NEUTE1DRAFT_137852 Neurospora tetrasperma NEUTE1DRAFT_137852 I
F503_07914 Ophiostoma piceae uamh F503_07914 I
PAAG_08645 Paracoccidioides sp lutzii PAAG_08645 I
Pc18g02200 Penicillium chrysogenum Pc18g02200 I
PDIP_73930 Penicillium digitatum PDIP_73930 I
PEX1_076370 Penicillium expansum PEX1_076370 I
PITC_027910 Penicillium italicum PITC_027910 I
PDE_02765 Penicillium oxalicum PDE_02765 I
PCH_Pc18g02200 Penicillium rubens PCH_Pc18g02200 I
U727_00431293291 Penicillium solitum U727_00431293291 I
PODANS_7_2090 Podospora anserina PODANS_7_2090 I
SAPIO_CDS5850 Scedosporium apiospermum SAPIO_CDS5850 I
SMAC_08830 Sordaria macrospora SMAC_08830 I
THITE_2119520 Thielavia terrestris THITE_2119520 I
PV09_02665 Verruconis gallopava PV09_02665 I
VDAG_06431 Verticillium dahliae VDAG_06431 I