Carubv10015986m.g (Capsella rubella)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Carubv10015986m.g T257779_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL103
M10918_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G18650_01 		0.729 0.729
AGL78
M10932_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT5G65330_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10015986m MADS box 38 85

Links

Other MADS box family TFs
Other Capsella rubella TFs

14 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.1681s0033 Capsella grandiflora Cagra.1681s0033 I 1.000
Bo5g117290 Brassica oleracea Bo5g117290 I 0.804
Bra022341 Brassica rapa Bra022341 I 0.804
Thhalv10022126m.g Eutrema salsugineum Thhalv10022126m.g I 0.771
Bostr.25375s0045 Boechera stricta Bostr.25375s0045 I 0.750
Bostr.0568s0255 Boechera stricta Bostr.0568s0255 I 0.739
AGL103 Arabidopsis thaliana AT3G18650 D 0.729
Bo1g117390 Brassica oleracea Bo1g117390 I 0.729
Bra037571 Brassica rapa Bra037571 N 0.717
AGL89 Arabidopsis thaliana AT5G27580 N 0.708
AGL78 Arabidopsis thaliana AT5G65330 D 0.708
fgenesh2_kg.8__2584__AT5G65330.1 Arabidopsis lyrata fgenesh2_kg.8__2584__AT5G65330.1 I 0.708
Bra025609 Brassica rapa Bra025609 I 0.702
Bostr.3751s0043 Boechera stricta Bostr.3751s0043 I 0.702