Bo5g117290 (Brassica oleracea)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bo5g117290 T253127_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL103
M10918_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G18650_01
0.761 0.761
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo5g117290.1 MADS box 22 67

Links

Other MADS box family TFs
Other Brassica oleracea TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bra022341 Brassica rapa Bra022341 I 1.000
Bo1g117390 Brassica oleracea Bo1g117390 I 0.870
Bra037571 Brassica rapa Bra037571 N 0.826
Cagra.1681s0033 Capsella grandiflora Cagra.1681s0033 I 0.804
Carubv10015986m.g Capsella rubella Carubv10015986m.g I 0.804
Thhalv10022126m.g Eutrema salsugineum Thhalv10022126m.g I 0.804
AGL105 Arabidopsis thaliana AT5G37415 I 0.769
AGL103 Arabidopsis thaliana AT3G18650 D 0.761
Bo3g071680 Brassica oleracea Bo3g071680 I 0.739
Bostr.25375s0045 Boechera stricta Bostr.25375s0045 I 0.717
Bostr.10058s0014 Boechera stricta Bostr.10058s0014 I 0.717
Bostr.3751s0043 Boechera stricta Bostr.3751s0043 I 0.702