evm.TU.contig_40189 (Carica papaya)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 evm.TU.contig_40189 T258124_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.TU.contig_40189.1 MADS box 10 58

Links

Other MADS box family TFs
Other Carica papaya TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000006549 Ailuropoda melanoleuca ENSAMEG00000006549 I
Alligator_sinensis_CCG005947.1 Alligator sinensis Alligator_sinensis_CCG005947.1 I
ENSAPLG00000003549 Anas platyrhynchos ENSAPLG00000003549 I
MLX Anolis carolinensis ENSACAG00000013679 I
ENSP00000246912-D1 Bos grunniens ENSP00000246912-D1 I
MLX Bos taurus ENSBTAG00000046670 I
MLX Callithrix jacchus ENSCJAG00000005011 I
Aan_R006200 Calypte anna Aan_R006200 I
MLX Canis familiaris ENSCAFG00000029102 I
Cmyd_10007085 Chelonia mydas Cmyd_10007085 I
ENSCSAG00000003241 Chlorocebus sabaeus ENSCSAG00000003241 I
ENSCHOG00000003363 Choloepus hoffmanni ENSCHOG00000003363 I
MLX Dasypus novemcinctus ENSDNOG00000045315 I
Mlx Dipodomys ordii ENSDORG00000006540 I
MLX Echinops telfairi ENSETEG00000017247 I
MLX Equus caballus ENSECAG00000023980 I
ENSEEUG00000003268 Erinaceus europaeus ENSEEUG00000003268 I
Mlx Gallus gallus ENSGALG00000003199 I
MLX Gorilla gorilla ENSGGOG00000010869 I
MLX Homo sapiens ENSG00000108788 D
ENSSTOG00000003660 Ictidomys tridecemlineatus ENSSTOG00000003660 I
ENSLACG00000007918 Latimeria chalumnae ENSLACG00000007918 I
MLX Loxodonta africana ENSLAFG00000000328 I
ENSP00000246912 Macaca fascicularis ENSP00000246912 I
MLX Macaca mulatta ENSMMUG00000009887 I
ENSMEUG00000000185 Macropus eugenii ENSMEUG00000000185 I
MLX Microcebus murinus ENSMICG00000010258 I
MLX Monodelphis domestica ENSMODG00000014918 D
ENSMPUG00000010285 Mustela putorius furo ENSMPUG00000010285 I
Mlx Mus musculus ENSMUSG00000017801 D
Myotis_brandtii_MLX_10015321 Myotis brandtii Myotis_brandtii_MLX_10015321 I
MLX Myotis lucifugus ENSMLUG00000016670 I
MLX Ochotona princeps ENSOPRG00000012322 I
Ogr17012 Ophisaurus gracilis Ogr17012 I
MLX Oryctolagus cuniculus ENSOCUG00000015210 I
MLX Otolemur garnettii ENSOGAG00000009867 I
ENSOARG00000002343 Ovis aries ENSOARG00000002343 I
MLX Pan troglodytes ENSPTRG00000009208 I
ENSPANG00000021416 Papio anubis ENSPANG00000021416 I
ENSPSIG00000015412 Pelodiscus sinensis ENSPSIG00000015412 I
Pvit_17633 Pogona vitticeps Pvit_17633 I
ENSPPYG00000008387 Pongo abelii ENSPPYG00000008387 I
MLX Procavia capensis ENSPCAG00000014225 I
MLX Pteropus vampyrus ENSPVAG00000016556 I
Mlx Rattus norvegicus ENSRNOG00000019983 I
ENSSHAG00000014167 Sarcophilus harrisii ENSSHAG00000014167 I
MLX Sorex araneus ENSSARG00000014166 I
MLX Sus scrofa ENSSSCG00000017397 I
ENSTSYG00000007534 Tarsius syrichta ENSTSYG00000007534 I
MLX Tupaia belangeri ENSTBEG00000002111 I
MLX Tursiops truncatus ENSTTRG00000016407 I