CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
evm.TU.supercontig_43.109
(
Carica papaya
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
evm.TU.supercontig_43.109
T258250_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_43.109
MADS box
12
62
RETKEQRAVTFSKRRRGLFNKAAELCVLCDFQVAVLVSSPNPAKLNKFYTF
Links
Other
MADS box
family TFs
Other
Carica papaya
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ACYPI52155
Acyrthosiphon pisum
ACYPI52155
I
ENSAMEG00000002906
Ailuropoda melanoleuca
ENSAMEG00000002906
I
Alligator_sinensis_CCG006492.1
Alligator sinensis
Alligator_sinensis_CCG006492.1
I
ENSAPLG00000012856
Anas platyrhynchos
ENSAPLG00000012856
I
ANCCAN_01421
Ancylostoma caninum
ANCCAN_01421
I
ENSACAG00000001481
Anolis carolinensis
ENSACAG00000001481
I
ENSACAG00000011033
Anolis carolinensis
ENSACAG00000011033
I
PAX5
Anolis carolinensis
ENSACAG00000011646
I
AALB001179
Anopheles albimanus
AALB001179
I
ACHR009211
Anopheles christyi
ACHR009211
I
ACHR009800
Anopheles christyi
ACHR009800
I
ACUA016445
Anopheles culicifacies
ACUA016445
I
ACUA027429
Anopheles culicifacies
ACUA027429
I
ADIR000964
Anopheles dirus
ADIR000964
I
ADIR011362
Anopheles dirus
ADIR011362
I
AEPI004837
Anopheles epiroticus
AEPI004837
I
AFUN002668
Anopheles funestus
AFUN002668
I
AFUN008226
Anopheles funestus
AFUN008226
I
AFUN011579
Anopheles funestus
AFUN011579
I
AGAP000057
Anopheles gambiae
AGAP000057
I
AMAM005900
Anopheles maculatus
AMAM005900
I
AMAM010937
Anopheles maculatus
AMAM010937
I
AMEC016969
Anopheles melas
AMEC016969
I
AMEM003247
Anopheles merus
AMEM003247
I
AMIN002123
Anopheles minimus
AMIN002123
I
AMIN007194
Anopheles minimus
AMIN007194
I
AQUA004184
Anopheles quadriannulatus
AQUA004184
I
Afo_R004464
Aptenodytes forsteri
Afo_R004464
I
ENSAMXG00000002161
Astyanax mexicanus
ENSAMXG00000002161
I
ENSAMXG00000018287
Astyanax mexicanus
ENSAMXG00000018287
I
ACEP12359
Atta cephalotes
ACEP12359
I
ACEP20056
Atta cephalotes
ACEP20056
I
BGLB002028
Biomphalaria glabrata
BGLB002028
I
BGLB007764
Biomphalaria glabrata
BGLB007764
I
ENSP00000384817-D1
Bos grunniens
ENSP00000384817-D1
I
PAX9
Bos taurus
ENSBTAG00000009186
I
estExt_fgenesh2_pg.C_420056
Branchiostoma floridae
estExt_fgenesh2_pg.C_420056
I
pax-2
Caenorhabditis elegans
WBGene00003938
D
PAX9
Callithrix jacchus
ENSCJAG00000016460
I
Aan_R005718
Calypte anna
Aan_R005718
I
Cflo_00736--XP_001122746.1_APIME
Camponotus floridanus
Cflo_00736--XP_001122746.1_APIME
I
Cflo_05394--XP_001120031.1_APIME
Camponotus floridanus
Cflo_05394--XP_001120031.1_APIME
I
PAX9
Canis familiaris
ENSCAFG00000013690
I
PAX9
Cavia porcellus
ENSCPOG00000010951
I
ENSCSAG00000015463
Chlorocebus sabaeus
ENSCSAG00000015463
I
CLEC012019
Cimex lectularius
CLEC012019
I
CGI_10012686
Crassostrea gigas
CGI_10012686
I
CpipJ_CPIJ009206
Culex pipiens
CpipJ_CPIJ009206
I
CPIJ009206
Culex quinquefasciatus
CPIJ009206
I
pax6b
Danio rerio
ENSDARG00000045936
I
pax6a
Danio rerio
ENSDARG00000103379
I
pax1a
Danio rerio
ENSDARG00000008203
I
pax8
Danio rerio
ENSDARG00000015879
I
pax2a
Danio rerio
ENSDARG00000028148
I
pax2b
Danio rerio
ENSDARG00000032578
D
pax9
Danio rerio
ENSDARG00000053829
D
DAPPUDRAFT_307722
Daphnia pulex
DAPPUDRAFT_307722
I
DAPPUDRAFT_311028
Daphnia pulex
DAPPUDRAFT_311028
I
DAPPUDRAFT_38922
Daphnia pulex
DAPPUDRAFT_38922
I
PAX9
Dasypus novemcinctus
ENSDNOG00000000352
I
YQE_05418
Dendroctonus ponderosae
YQE_05418
N
YQE_12759
Dendroctonus ponderosae
YQE_12759
N
DICVIV_04707
Dictyocaulus viviparus
DICVIV_04707
I
Pax7
Dipodomys ordii
ENSDORG00000011854
I
GH20564
Drosophila grimshawi
FBgn0128027
I
GH23966
Drosophila grimshawi
FBgn0131423
I
GI14046
Drosophila mojavensis
FBgn0136800
I
GL18401
Drosophila persimilis
FBgn0156002
I
spa-sv
Drosophila pseudoobscura
FBgn0249275
I
GM13025
Drosophila sechellia
FBgn0167956
I
GJ13730
Drosophila virilis
FBgn0200951
I
GK13586
Drosophila willistoni
FBgn0215594
I
ECANG7_07793
Echinococcus canadensis
ECANG7_07793
I
PAX9
Echinops telfairi
ENSETEG00000002086
I
PAX9
Equus caballus
ENSECAG00000023712
I
PAX9
Felis catus
ENSFCAG00000001024
I
ENSFALG00000006155
Ficedula albicollis
ENSFALG00000006155
I
ENSGMOG00000000463
Gadus morhua
ENSGMOG00000000463
I
ENSGMOG00000009128
Gadus morhua
ENSGMOG00000009128
I
PAX9
Gallus gallus
ENSGALG00000010114
I
pax1a
Gasterosteus aculeatus
ENSGACG00000006987
I
pax9
Gasterosteus aculeatus
ENSGACG00000011298
I
Gfo_R012945
Geospiza fortis
Gfo_R012945
I
GPUH_0000812501
Gongylonema pulchrum
GPUH_0000812501
I
PAX9
Gorilla gorilla
ENSGGOG00000001528
I
HCOI01205400
Haemonchus contortus
HCOI01205400
I
HPLM_0000491501
Haemonchus placei
HPLM_0000491501
I
HPBE_0000479901
Heligmosomoides bakeri
HPBE_0000479901
I
HelroG124549
Helobdella robusta
HelroG124549
I
PAX6
Homo sapiens
ENSG00000007372
D
PAX7
Homo sapiens
ENSG00000009709
D
PAX9
Homo sapiens
ENSG00000198807
D
ENSSTOG00000015730
Ictidomys tridecemlineatus
ENSSTOG00000015730
I
ISCW000175
Ixodes scapularis
ISCW000175
I
ENSLACG00000013159
Latimeria chalumnae
ENSLACG00000013159
I
ENSLOCG00000012825
Lepisosteus oculatus
ENSLOCG00000012825
I
ENSLOCG00000013992
Lepisosteus oculatus
ENSLOCG00000013992
I
ENSLOCG00000015261
Lepisosteus oculatus
ENSLOCG00000015261
I
LotgiG135549
Lottia gigantea
LotgiG135549
I
LotgiG161614
Lottia gigantea
LotgiG161614
I
PAX9
Loxodonta africana
ENSLAFG00000017541
I
LCUP005878
Lucilia cuprina
LCUP005878
I
LCUP013028
Lucilia cuprina
LCUP013028
I
LCUP015670
Lucilia cuprina
LCUP015670
I
LLOJ002076
Lutzomyia longipalpis
LLOJ002076
I
ENSP00000355245
Macaca fascicularis
ENSP00000355245
I
PAX9
Macaca mulatta
ENSMMUG00000009648
I
ENSMEUG00000002095
Macropus eugenii
ENSMEUG00000002095
I
MESCA003563
Megaselia scalaris
MESCA003563
I
augustus_masked-nMf.1.1.scaf45992-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf45992-processed-gene-0.0
I
PAX8
Microcebus murinus
ENSMICG00000003265
I
PAX9
Microcebus murinus
ENSMICG00000010808
I
PAX9
Monodelphis domestica
ENSMODG00000012681
I
ENSMODG00000025571
Monodelphis domestica
ENSMODG00000025571
I
MDOA001030
Musca domestica
MDOA001030
I
MDOA010966
Musca domestica
MDOA010966
I
ENSMPUG00000016259
Mustela putorius furo
ENSMPUG00000016259
I
Pax9
Mus musculus
ENSMUSG00000001497
I
Pax5
Mus musculus
ENSMUSG00000014030
D
PAX9
Myotis lucifugus
ENSMLUG00000011407
I
ENSNLEG00000003346
Nomascus leucogenys
ENSNLEG00000003346
I
PAX8
Ochotona princeps
ENSOPRG00000012910
I
Ocbimv22007901m.g
Octopus bimaculoides
Ocbimv22007901m.g
I
OESDEN_18680
Oesophagostomum dentatum
OESDEN_18680
I
Ogr19508
Ophisaurus gracilis
Ogr19508
I
ENSONIG00000000990
Oreochromis niloticus
ENSONIG00000000990
I
ENSONIG00000008137
Oreochromis niloticus
ENSONIG00000008137
I
ENSONIG00000016065
Oreochromis niloticus
ENSONIG00000016065
I
PAX1
Ornithorhynchus anatinus
ENSOANG00000002008
I
PAX9
Ornithorhynchus anatinus
ENSOANG00000014065
I
pax8
Oryzias latipes
ENSORLG00000007225
I
pax1
Oryzias latipes
ENSORLG00000017412
I
ENSORLG00000019389
Oryzias latipes
ENSORLG00000019389
I
ENSOGAG00000013131
Otolemur garnettii
ENSOGAG00000013131
I
ENSOARG00000008050
Ovis aries
ENSOARG00000008050
I
PAX9
Pan troglodytes
ENSPTRG00000006281
I
ENSPANG00000000932
Papio anubis
ENSPANG00000000932
I
PEQ_0001166701
Parascaris equorum
PEQ_0001166701
I
PTRK_0001603600
Parastrongyloides trichosuri
PTRK_0001603600
I
ENSPSIG00000010961
Pelodiscus sinensis
ENSPSIG00000010961
I
ENSPMAG00000010414
Petromyzon marinus
ENSPMAG00000010414
I
ENSPFOG00000003208
Poecilia formosa
ENSPFOG00000003208
I
ENSPFOG00000003702
Poecilia formosa
ENSPFOG00000003702
I
ENSPFOG00000017550
Poecilia formosa
ENSPFOG00000017550
I
Pvit_17942
Pogona vitticeps
Pvit_17942
I
ENSPPYG00000005755
Pongo abelii
ENSPPYG00000005755
I
PAX7
Procavia capensis
ENSPCAG00000005303
I
Pax9
Rattus norvegicus
ENSRNOG00000008826
I
Pax5
Rattus norvegicus
ENSRNOG00000024729
I
RPRC001910
Rhodnius prolixus
RPRC001910
I
RPRC011448
Rhodnius prolixus
RPRC011448
N
Sakowv30023257m.g
Saccoglossus kowalevskii
Sakowv30023257m.g
I
Sakowv30025789m.g
Saccoglossus kowalevskii
Sakowv30025789m.g
I
ENSSHAG00000005531
Sarcophilus harrisii
ENSSHAG00000005531
I
SSLN_0001115101
Schistocephalus solidus
SSLN_0001115101
I
SCUD_0000535601
Schistosoma curassoni
SCUD_0000535601
I
Sjc_0077510
Schistosoma japonicum
Sjc_0077510
I
SMTD_0001015101
Schistosoma mattheei
SMTD_0001015101
N
SROB_0000822501
Schistosoma rodhaini
SROB_0000822501
I
SBAD_0001213701
Soboliphyme baturini
SBAD_0001213701
I
PAX9
Sorex araneus
ENSSARG00000000337
I
L596_g7168
Steinernema carpocapsae
L596_g7168
I
L889_g28670
Steinernema feltiae
L889_g28670
I
L898_g18055
Steinernema monticolum
L898_g18055
I
SMAR014608
Strigamia maritima
SMAR014608
I
SPAL_0000372000
Strongyloides papillosus
SPAL_0000372000
I
SSTP_0000522800
Strongyloides stercoralis
SSTP_0000522800
I
SVE_0227200
Strongyloides venezuelensis
SVE_0227200
I
ENSSSCG00000001943
Sus scrofa
ENSSSCG00000001943
I
PAX9
Taeniopygia guttata
ENSTGUG00000012015
I
pax1a
Takifugu rubripes
ENSTRUG00000008079
I
pax9
Takifugu rubripes
ENSTRUG00000011965
I
pax2b
Takifugu rubripes
ENSTRUG00000011987
I
ENSTRUG00000014051
Takifugu rubripes
ENSTRUG00000014051
I
ENSTSYG00000008085
Tarsius syrichta
ENSTSYG00000008085
I
TELCIR_10899
Teladorsagia circumcincta
TELCIR_10899
I
pax5
Tetraodon nigroviridis
ENSTNIG00000005085
I
pax8
Tetraodon nigroviridis
ENSTNIG00000009029
I
ENSTNIG00000013141
Tetraodon nigroviridis
ENSTNIG00000013141
I
pax1a
Tetraodon nigroviridis
ENSTNIG00000016891
I
pax9
Tetraodon nigroviridis
ENSTNIG00000019284
I
PAX9
Tupaia belangeri
ENSTBEG00000002460
I
PAX5
Tupaia belangeri
ENSTBEG00000007983
I
PAX5
Tursiops truncatus
ENSTTRG00000006049
I
PAX8
Vicugna pacos
ENSVPAG00000003973
I
pax2.L
Xenopus laevis
XB-GENE-486805
I
pax9.L
Xenopus laevis
XB-GENE-864845
I
pax9
Xenopus tropicalis
XB-GENE-482238
I
pax1
Xenopus tropicalis
XB-GENE-487951
I
ENSXMAG00000015762
Xiphophorus maculatus
ENSXMAG00000015762
I
ENSXMAG00000019114
Xiphophorus maculatus
ENSXMAG00000019114
I
L798_15745
Zootermopsis nevadensis
L798_15745
I