CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_43.109
(
Carica papaya
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
evm.TU.supercontig_43.109
T258250_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_43.109
MADS box
12
62
RETKEQRAVTFSKRRRGLFNKAAELCVLCDFQVAVLVSSPNPAKLNKFYTF
Links
Other
MADS box
family TFs
Other
Carica papaya
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ANCCAN_10515
Ancylostoma caninum
ANCCAN_10515
N
ACOC_0000264101
Angiostrongylus costaricensis
ACOC_0000264101
N
CBN00680
Caenorhabditis brenneri
CBN00680
N
CBG14059
Caenorhabditis briggsae
CBG14059
N
peb-1
Caenorhabditis elegans
WBGene00003968
N
CJA02677
Caenorhabditis japonica
CJA02677
N
CRE00468
Caenorhabditis remanei
CRE00468
N
DICVIV_11352
Dictyocaulus viviparus
DICVIV_11352
N
HCOI00346400
Haemonchus contortus
HCOI00346400
N
HPLM_0000045701
Haemonchus placei
HPLM_0000045701
N
HPBE_0000694301
Heligmosomoides bakeri
HPBE_0000694301
N
NECAME_09766
Necator americanus
NECAME_09766
N
OESDEN_16355
Oesophagostomum dentatum
OESDEN_16355
N
TELCIR_05972
Teladorsagia circumcincta
TELCIR_05972
N