CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_43.109
(
Carica papaya
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
evm.TU.supercontig_43.109
T258250_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_43.109
MADS box
12
62
RETKEQRAVTFSKRRRGLFNKAAELCVLCDFQVAVLVSSPNPAKLNKFYTF
Links
Other
MADS box
family TFs
Other
Carica papaya
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ACYPI002601
Acyrthosiphon pisum
ACYPI002601
I
ENSAMEG00000005942
Ailuropoda melanoleuca
ENSAMEG00000005942
I
ENSAMEG00000015953
Ailuropoda melanoleuca
ENSAMEG00000015953
I
Alligator_sinensis_CCG001917.1
Alligator sinensis
Alligator_sinensis_CCG001917.1
I
ENSAPLG00000008024
Anas platyrhynchos
ENSAPLG00000008024
I
TCF21
Anolis carolinensis
ENSACAG00000010325
I
MSC
Anolis carolinensis
ENSACAG00000014585
I
Afo_R014913
Aptenodytes forsteri
Afo_R014913
I
ENSAMXG00000000487
Astyanax mexicanus
ENSAMXG00000000487
I
BGLB011346
Biomphalaria glabrata
BGLB011346
I
ENSBTAP00000044112-D1
Bos grunniens
ENSBTAP00000044112-D1
I
ENSBTAP00000052463-D1
Bos grunniens
ENSBTAP00000052463-D1
I
MSC
Bos taurus
ENSBTAG00000005404
I
TCF21
Bos taurus
ENSBTAG00000021827
I
fgenesh2_pg.scaffold_201000028
Branchiostoma floridae
fgenesh2_pg.scaffold_201000028
I
gw.912.11.1
Branchiostoma floridae
gw.912.11.1
I
Brh_R005605
Buceros rhinoceros
Brh_R005605
I
TCF21
Callithrix jacchus
ENSCJAG00000002811
I
MSC
Callithrix jacchus
ENSCJAG00000007766
I
Aan_R009769
Calypte anna
Aan_R009769
I
Cflo_04912--XP_001121050.1_APIME
Camponotus floridanus
Cflo_04912--XP_001121050.1_APIME
I
TCF21
Canis familiaris
ENSCAFG00000000205
I
MSC
Canis familiaris
ENSCAFG00000007923
I
CapteG80741
Capitella teleta
CapteG80741
I
ENSCPOG00000004726
Cavia porcellus
ENSCPOG00000004726
I
TCF21
Cavia porcellus
ENSCPOG00000024201
I
ENSCSAG00000013709
Chlorocebus sabaeus
ENSCSAG00000013709
I
ENSCSAG00000016705
Chlorocebus sabaeus
ENSCSAG00000016705
I
CLEC012607
Cimex lectularius
CLEC012607
I
CGI_10026944
Crassostrea gigas
CGI_10026944
I
tcf21
Danio rerio
ENSDARG00000036869
I
msc
Danio rerio
ENSDARG00000045353
I
DAPPUDRAFT_37461
Daphnia pulex
DAPPUDRAFT_37461
I
MSC
Dasypus novemcinctus
ENSDNOG00000019019
I
TCF21
Dasypus novemcinctus
ENSDNOG00000042846
I
ECANG7_04949
Echinococcus canadensis
ECANG7_04949
I
EmuJ_000624300
Echinococcus multilocularis
EmuJ_000624300
I
TCF21
Echinops telfairi
ENSETEG00000012492
I
MSC
Equus caballus
ENSECAG00000008333
I
TCF21
Equus caballus
ENSECAG00000019197
I
MSC
Erinaceus europaeus
ENSEEUG00000005021
I
TCF21
Felis catus
ENSFCAG00000031261
I
ENSFALG00000008455
Ficedula albicollis
ENSFALG00000008455
I
ENSFALG00000011861
Ficedula albicollis
ENSFALG00000011861
I
ENSGMOG00000019481
Gadus morhua
ENSGMOG00000019481
I
ENSGALG00000019470
Gallus gallus
ENSGALG00000019470
I
TCF21
Gallus gallus
ENSGALG00000029024
I
msc
Gasterosteus aculeatus
ENSGACG00000002802
I
tcf21
Gasterosteus aculeatus
ENSGACG00000010957
I
Gfo_R006439
Geospiza fortis
Gfo_R006439
I
TCF21
Gorilla gorilla
ENSGGOG00000005460
I
MSC
Gorilla gorilla
ENSGGOG00000009955
I
HHAL000695-PA
Halyomorpha halys
HHAL000695-PA
I
TCF21
Homo sapiens
ENSG00000118526
D
MSC
Homo sapiens
ENSG00000178860
D
ENSSTOG00000023733
Ictidomys tridecemlineatus
ENSSTOG00000023733
I
ENSSTOG00000024832
Ictidomys tridecemlineatus
ENSSTOG00000024832
I
ENSLACG00000005024
Latimeria chalumnae
ENSLACG00000005024
I
ENSLACG00000014348
Latimeria chalumnae
ENSLACG00000014348
I
ENSLOCG00000003912
Lepisosteus oculatus
ENSLOCG00000003912
I
ENSLOCG00000016232
Lepisosteus oculatus
ENSLOCG00000016232
I
LotgiG99224
Lottia gigantea
LotgiG99224
I
MSC
Loxodonta africana
ENSLAFG00000002649
I
TCF21
Loxodonta africana
ENSLAFG00000009507
I
LLOJ001927
Lutzomyia longipalpis
LLOJ001927
I
ENSP00000321445
Macaca fascicularis
ENSP00000321445
I
ENSP00000356857
Macaca fascicularis
ENSP00000356857
I
MSC
Macaca mulatta
ENSMMUG00000000947
I
TCF21
Macaca mulatta
ENSMMUG00000002871
I
ENSMEUG00000005491
Macropus eugenii
ENSMEUG00000005491
I
TCF21
Meleagris gallopavo
ENSMGAG00000013117
I
MCOS_0000023201
Mesocestoides corti
MCOS_0000023201
I
ENSMICG00000014144
Microcebus murinus
ENSMICG00000014144
I
MSC
Monodelphis domestica
ENSMODG00000007225
I
TCF21
Monodelphis domestica
ENSMODG00000017516
I
ENSMPUG00000010593
Mustela putorius furo
ENSMPUG00000010593
I
ENSMPUG00000014798
Mustela putorius furo
ENSMPUG00000014798
I
Msc
Mus musculus
ENSMUSG00000025930
D
Tcf21
Mus musculus
ENSMUSG00000045680
D
Myotis_brandtii_TCF21_10035690
Myotis brandtii
Myotis_brandtii_TCF21_10035690
I
MSC
Myotis lucifugus
ENSMLUG00000008572
I
TCF21
Myotis lucifugus
ENSMLUG00000009194
I
ENSNLEG00000011452
Nomascus leucogenys
ENSNLEG00000011452
I
ENSNLEG00000014647
Nomascus leucogenys
ENSNLEG00000014647
I
Ogr02938
Ophisaurus gracilis
Ogr02938
I
ENSONIG00000000446
Oreochromis niloticus
ENSONIG00000000446
I
ENSONIG00000014278
Oreochromis niloticus
ENSONIG00000014278
I
TCF21
Ornithorhynchus anatinus
ENSOANG00000013098
I
MSC
Oryctolagus cuniculus
ENSOCUG00000007208
I
TCF21
Oryctolagus cuniculus
ENSOCUG00000017761
I
msc
Oryzias latipes
ENSORLG00000008030
I
tcf21
Oryzias latipes
ENSORLG00000016491
I
MSC
Otolemur garnettii
ENSOGAG00000013827
I
TCF21
Otolemur garnettii
ENSOGAG00000034073
I
ENSOARG00000004844
Ovis aries
ENSOARG00000004844
I
ENSOARG00000014623
Ovis aries
ENSOARG00000014623
I
TCF21
Pan troglodytes
ENSPTRG00000018622
I
MSC
Pan troglodytes
ENSPTRG00000020339
I
ENSPANG00000022301
Papio anubis
ENSPANG00000022301
I
ENSPANG00000024238
Papio anubis
ENSPANG00000024238
I
ENSPSIG00000003604
Pelodiscus sinensis
ENSPSIG00000003604
I
ENSPMAG00000000379
Petromyzon marinus
ENSPMAG00000000379
I
PPAI008462
Phlebotomus papatasi
PPAI008462
I
ENSPFOG00000010821
Poecilia formosa
ENSPFOG00000010821
I
ENSPFOG00000020725
Poecilia formosa
ENSPFOG00000020725
I
ENSPPYG00000017022
Pongo abelii
ENSPPYG00000017022
I
ENSPPYG00000018665
Pongo abelii
ENSPPYG00000018665
I
MSC
Procavia capensis
ENSPCAG00000004330
I
ENSPCAG00000006459
Procavia capensis
ENSPCAG00000006459
I
MSC
Pteropus vampyrus
ENSPVAG00000009083
I
TCF21
Pteropus vampyrus
ENSPVAG00000009085
I
Msc
Rattus norvegicus
ENSRNOG00000007540
I
Tcf21
Rattus norvegicus
ENSRNOG00000016700
I
RPRC001590
Rhodnius prolixus
RPRC001590
I
ENSSHAG00000002801
Sarcophilus harrisii
ENSSHAG00000002801
I
ENSSHAG00000004870
Sarcophilus harrisii
ENSSHAG00000004870
I
SPU_012008
Strongylocentrotus purpuratus
SPU_012008
I
ENSSSCG00000004174
Sus scrofa
ENSSSCG00000004174
I
MSC
Sus scrofa
ENSSSCG00000006187
I
TASK_0000025401
Taenia asiatica
TASK_0000025401
I
TsM_000945000
Taenia solium
TsM_000945000
I
MSC
Taeniopygia guttata
ENSTGUG00000011502
I
TCF21
Taeniopygia guttata
ENSTGUG00000011548
I
tcf21
Takifugu rubripes
ENSTRUG00000003919
I
msc
Takifugu rubripes
ENSTRUG00000012425
I
msc
Tetraodon nigroviridis
ENSTNIG00000008188
I
tcf21
Tetraodon nigroviridis
ENSTNIG00000016326
I
MSC
Tupaia belangeri
ENSTBEG00000014659
I
TCF21
Tursiops truncatus
ENSTTRG00000009645
I
MSC
Tursiops truncatus
ENSTTRG00000017260
I
MSC
Vicugna pacos
ENSVPAG00000000378
I
TCF21
Vicugna pacos
ENSVPAG00000006271
I
tcf21.L
Xenopus laevis
XB-GENE-484809
I
tcf21
Xenopus tropicalis
XB-GENE-484805
I
msc
Xenopus tropicalis
XB-GENE-978233
I
ENSXMAG00000004322
Xiphophorus maculatus
ENSXMAG00000004322
I
ENSXMAG00000010332
Xiphophorus maculatus
ENSXMAG00000010332
I