CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_43.109
(
Carica papaya
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
evm.TU.supercontig_43.109
T258250_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_43.109
MADS box
12
62
RETKEQRAVTFSKRRRGLFNKAAELCVLCDFQVAVLVSSPNPAKLNKFYTF
Links
Other
MADS box
family TFs
Other
Carica papaya
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
bHLH071
Arabidopsis lyrata
fgenesh2_kg.8__126__AT5G46690.1
N
BHLH71
Arabidopsis thaliana
AT5G46690
N
BHLH57
Arabidopsis thaliana
AT4G01460
N
Bostr.7365s0007
Boechera stricta
Bostr.7365s0007
N
Bo9g004020
Brassica oleracea
Bo9g004020
N
Bo9g065460
Brassica oleracea
Bo9g065460
N
Bo7g075600
Brassica oleracea
Bo7g075600
N
Bra017533
Brassica rapa
Bra017533
N
Bra025007
Brassica rapa
Bra025007
N
Bra037414
Brassica rapa
Bra037414
N
Cagra.10175s0007
Capsella grandiflora
Cagra.10175s0007
N
Cagra.0751s0031
Capsella grandiflora
Cagra.0751s0031
N
Carubv10026748m.g
Capsella rubella
Carubv10026748m.g
N
Carubv10001470m.g
Capsella rubella
Carubv10001470m.g
N
evm.TU.supercontig_55.64
Carica papaya
evm.TU.supercontig_55.64
N
Thhalv10028815m.g
Eutrema salsugineum
Thhalv10028815m.g
N
Thhalv10000961m.g
Eutrema salsugineum
Thhalv10000961m.g
N
MLOC_10595
Hordeum vulgare
MLOC_10595
N
GSMUA_Achr10G19180_001
Musa acuminata
GSMUA_Achr10G19180_001
N
e_gw1.519.9.1
Physcomitrella patens
e_gw1.519.9.1
N
Traes_4DL_A76BE77E4
Triticum aestivum
Traes_4DL_A76BE77E4
N
Traes_4BL_A48C29364
Triticum aestivum
Traes_4BL_A48C29364
N
Traes_4AL_EE88645E2
Triticum aestivum
Traes_4AL_EE88645E2
N