CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_43.109
(
Carica papaya
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
evm.TU.supercontig_43.109
T258250_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_43.109
MADS box
12
62
RETKEQRAVTFSKRRRGLFNKAAELCVLCDFQVAVLVSSPNPAKLNKFYTF
Links
Other
MADS box
family TFs
Other
Carica papaya
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
evm.TU.supercontig_103.82
Carica papaya
evm.TU.supercontig_103.82
N
0.854
evm.TU.supercontig_173.23
Carica papaya
evm.TU.supercontig_173.23
N
0.812
evm.TU.supercontig_173.25
Carica papaya
evm.TU.supercontig_173.25
N
0.812
evm.TU.supercontig_173.29
Carica papaya
evm.TU.supercontig_173.29
N
0.766
evm.TU.supercontig_173.32
Carica papaya
evm.TU.supercontig_173.32
N
0.812
evm.TU.supercontig_173.35
Carica papaya
evm.TU.supercontig_173.35
N
0.812
28180.m000391
Ricinus communis
28180.m000391
N
0.702