CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_43.109
(
Carica papaya
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
evm.TU.supercontig_43.109
T258250_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_43.109
MADS box
12
62
RETKEQRAVTFSKRRRGLFNKAAELCVLCDFQVAVLVSSPNPAKLNKFYTF
Links
Other
MADS box
family TFs
Other
Carica papaya
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSAMEG00000006226
Ailuropoda melanoleuca
ENSAMEG00000006226
I
Alligator_sinensis_CCG021550.1
Alligator sinensis
Alligator_sinensis_CCG021550.1
I
SALL2
Anolis carolinensis
ENSACAG00000000030
I
ENSP00000333537-D1
Bos grunniens
ENSP00000333537-D1
I
SALL2
Callithrix jacchus
ENSCJAG00000008855
I
SALL2
Canis familiaris
ENSCAFG00000005676
I
ENSCPOG00000001022
Cavia porcellus
ENSCPOG00000001022
I
Cmyd_10001224
Chelonia mydas
Cmyd_10001224
I
ENSCSAG00000016461
Chlorocebus sabaeus
ENSCSAG00000016461
I
SALL2
Dasypus novemcinctus
ENSDNOG00000032317
I
SALL2
Equus caballus
ENSECAG00000024449
I
SALL2
Felis catus
ENSFCAG00000026866
I
SALL2
Gorilla gorilla
ENSGGOG00000009133
I
SALL2
Homo sapiens
ENSG00000165821
D
ENSSTOG00000023637
Ictidomys tridecemlineatus
ENSSTOG00000023637
I
SALL2
Loxodonta africana
ENSLAFG00000032150
I
ENSP00000333537
Macaca fascicularis
ENSP00000333537
I
ENSMEUG00000000526
Macropus eugenii
ENSMEUG00000000526
I
SALL2
Microcebus murinus
ENSMICG00000015037
I
ENSMPUG00000000199
Mustela putorius furo
ENSMPUG00000000199
I
Myotis_brandtii_SALL2_10005316
Myotis brandtii
Myotis_brandtii_SALL2_10005316
I
SALL2
Myotis lucifugus
ENSMLUG00000009185
I
ENSNLEG00000014602
Nomascus leucogenys
ENSNLEG00000014602
I
Ogr13603
Ophisaurus gracilis
Ogr13603
I
SALL2
Oryctolagus cuniculus
ENSOCUG00000027464
I
SALL2
Otolemur garnettii
ENSOGAG00000031464
I
ENSOARG00000019612
Ovis aries
ENSOARG00000019612
I
SALL2
Pan troglodytes
ENSPTRG00000006128
I
ENSPANG00000020006
Papio anubis
ENSPANG00000020006
I
ENSPPYG00000005600
Pongo abelii
ENSPPYG00000005600
I
SALL2
Procavia capensis
ENSPCAG00000006689
I
SALL2
Pteropus vampyrus
ENSPVAG00000000277
I
SALL2
Tursiops truncatus
ENSTTRG00000012842
I
CAJ82406
Xenopus tropicalis
CAJ82406
I