Thhalv10002350m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10002350m.g T259097_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.756 0.756
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10002350m MADS box 10 55

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000019874 Ailuropoda melanoleuca ENSAMEG00000019874 I
Alligator_sinensis_CCG020380.1 Alligator sinensis Alligator_sinensis_CCG020380.1 I
ENSAPLG00000001852 Anas platyrhynchos ENSAPLG00000001852 I
ENSACAG00000001604 Anolis carolinensis ENSACAG00000001604 I
Afo_R001760 Aptenodytes forsteri Afo_R001760 I
ENSP00000281047-D1 Bos grunniens ENSP00000281047-D1 I
MSGN1 Bos taurus ENSBTAG00000039113 I
Brh_R011720 Buceros rhinoceros Brh_R011720 I
MSGN1 Callithrix jacchus ENSCJAG00000032633 I
Aan_R015364 Calypte anna Aan_R015364 I
MSGN1 Canis familiaris ENSCAFG00000003750 I
MSGN1 Cavia porcellus ENSCPOG00000003061 I
Cmyd_10010636 Chelonia mydas Cmyd_10010636 I
ENSCSAG00000000377 Chlorocebus sabaeus ENSCSAG00000000377 I
MSGN1 Dasypus novemcinctus ENSDNOG00000013441 I
Msgn1 Dipodomys ordii ENSDORG00000003509 I
MSGN1 Equus caballus ENSECAG00000002724 I
MSGN1 Erinaceus europaeus ENSEEUG00000015222 I
MSGN1 Felis catus ENSFCAG00000013583 I
ENSFALG00000001820 Ficedula albicollis ENSFALG00000001820 I
MSGN1 Gallus gallus ENSGALG00000016469 I
Gfo_R015241 Geospiza fortis Gfo_R015241 I
MSGN1 Gorilla gorilla ENSGGOG00000012168 I
ENSSTOG00000013981 Ictidomys tridecemlineatus ENSSTOG00000013981 I
ENSLOCG00000017878 Lepisosteus oculatus ENSLOCG00000017878 I
MSGN1 Loxodonta africana ENSLAFG00000015319 I
ENSP00000281047 Macaca fascicularis ENSP00000281047 I
MSGN1 Macaca mulatta ENSMMUG00000008141 I
ENSMEUG00000006206 Macropus eugenii ENSMEUG00000006206 I
MSGN1 Meleagris gallopavo ENSMGAG00000016374 I
ENSMICG00000010842 Microcebus murinus ENSMICG00000010842 I
MSGN1 Monodelphis domestica ENSMODG00000004056 I
ENSMPUG00000019484 Mustela putorius furo ENSMPUG00000019484 I
Msgn1 Mus musculus ENSMUSG00000047002 D
Myotis_brandtii_MSGN1_10020188 Myotis brandtii Myotis_brandtii_MSGN1_10020188 I
MSGN1 Myotis lucifugus ENSMLUG00000007599 I
ENSNLEG00000018810 Nomascus leucogenys ENSNLEG00000018810 I
Ogr03919 Ophisaurus gracilis Ogr03919 I
MSGN1 Ornithorhynchus anatinus ENSOANG00000002188 I
MSGN1 Oryctolagus cuniculus ENSOCUG00000000309 I
MSGN1 Otolemur garnettii ENSOGAG00000012569 I
ENSOARG00000016765 Ovis aries ENSOARG00000016765 I
MSGN1 Pan troglodytes ENSPTRG00000011679 I
ENSPANG00000004064 Papio anubis ENSPANG00000004064 I
Pvit_07087 Pogona vitticeps Pvit_07087 I
ENSPPYG00000012628 Pongo abelii ENSPPYG00000012628 I
MSGN1 Procavia capensis ENSPCAG00000015116 I
MSGN1 Pteropus vampyrus ENSPVAG00000015666 I
Msgn1 Rattus norvegicus ENSRNOG00000028518 I
MSGN1 Sorex araneus ENSSARG00000007866 I
MSGN1 Sus scrofa ENSSSCG00000026538 I
MSGN1 Taeniopygia guttata ENSTGUG00000013122 I
ENSTSYG00000003733 Tarsius syrichta ENSTSYG00000003733 I
MSGN1 Tupaia belangeri ENSTBEG00000001387 I
MSGN1 Tursiops truncatus ENSTTRG00000015917 I
Tal_R008386 Tyto alba Tal_R008386 I