Thhalv10002996m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10002996m.g T259103_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.711 0.711
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10002996m MADS box 10 54

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCCEY_02206 Ancylostoma ceylanicum ANCCEY_02206 N 0.000
ANCDUO_19443 Ancylostoma duodenale ANCDUO_19443 N 0.000
BXY_1188800 Bursaphelenchus xylophilus BXY_1188800 N 0.000
BXY_0332200 Bursaphelenchus xylophilus BXY_0332200 N 0.000
CBN02605 Caenorhabditis brenneri CBN02605 N 0.000
CBN30611 Caenorhabditis brenneri CBN30611 N 0.000
CBG05270 Caenorhabditis briggsae CBG05270 N 0.000
CBG07379 Caenorhabditis briggsae CBG07379 N 0.000
nhr-32 Caenorhabditis elegans WBGene00003626 N 0.000
nhr-71 Caenorhabditis elegans WBGene00003661 N 0.000
CJA10118 Caenorhabditis japonica CJA10118 N 0.000
CJA04524 Caenorhabditis japonica CJA04524 N 0.000
CRE22320 Caenorhabditis remanei CRE22320 N 0.000
CRE19235 Caenorhabditis remanei CRE19235 N 0.000
nDi.2.2.2.g04775 Dirofilaria immitis nDi.2.2.2.g04775 N 0.000
GPLIN_000663400 Globodera pallida GPLIN_000663400 N 0.000
GPUH_0002529501 Gongylonema pulchrum GPUH_0002529501 N 0.000
LOAG_12834 Loa loa LOAG_12834 N 0.000
NECAME_02646 Necator americanus NECAME_02646 N 0.000
nOo.2.0.1.g08044 Onchocerca ochengi nOo.2.0.1.g08044 N 0.000
WBGene00239074 Onchocerca volvulus WBGene00239074 N 0.000
scaffold50-EXSNAP2012.1 Pristionchus exspectatus scaffold50-EXSNAP2012.1 N 0.000
scaffold429-EXSNAP2012.6 Pristionchus exspectatus scaffold429-EXSNAP2012.6 N 0.000
RSKR_0000313900 Rhabditophanes kr3021 RSKR_0000313900 N 0.000
L596_g18686 Steinernema carpocapsae L596_g18686 N 0.000
L596_g18692 Steinernema carpocapsae L596_g18692 N 0.000
L893_g20500 Steinernema glaseri L893_g20500 N 0.000
L893_g13248 Steinernema glaseri L893_g13248 N 0.000
L892_g23809 Steinernema scapterisci L892_g23809 N 0.000
L892_g2121 Steinernema scapterisci L892_g2121 N 0.000
SMUV_0001020501 Syphacia muris SMUV_0001020501 N 0.000
WUBG_12380 Wuchereria bancrofti WUBG_12380 N 0.000