Thhalv10019516m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10019516m.g T259154_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.723 0.723
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10019516m MADS box 10 57

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00057p00091350 Amborella trichopoda AMTR_s00057p00091350 I
AMTR_s00044p00165760 Amborella trichopoda AMTR_s00044p00165760 N
Aquca_015_00350 Aquilegia coerulea Aquca_015_00350 N
fgenesh2_kg.7__520__AT4G35590.1 Arabidopsis lyrata fgenesh2_kg.7__520__AT4G35590.1 N
RKD5 Arabidopsis thaliana AT4G35590 N
Bostr.7867s1419 Boechera stricta Bostr.7867s1419 N
Bo1g006340 Brassica oleracea Bo1g006340 N
Bra011626 Brassica rapa Bra011626 N
Cagra.2350s0102 Capsella grandiflora Cagra.2350s0102 N
Carubv10005148m.g Capsella rubella Carubv10005148m.g N
Cla014580 Citrullus lanatus Cla014580 N
orange1.1g039420m.g Citrus sinensis orange1.1g039420m.g N
Cucsa.044270 Cucumis sativus Cucsa.044270 N
Thhalv10027037m.g Eutrema salsugineum Thhalv10027037m.g N
gene13055-v1.0-hybrid Fragaria vesca gene13055-v1.0-hybrid N
GLYMA01G36360 Glycine max GLYMA01G36360 N
GLYMA11G09080 Glycine max GLYMA11G09080 N
Gorai.003G002500 Gossypium raimondii Gorai.003G002500 N
MLOC_12609 Hordeum vulgare MLOC_12609 I
chr2.CM0272.20.nd Lotus japonicus chr2.CM0272.20.nd N
MDP0000291622 Malus domestica MDP0000291622 N
MDP0000215412 Malus domestica MDP0000215412 N
MDP0000125133 Malus domestica MDP0000125133 N
MDP0000192895 Malus domestica MDP0000192895 N
cassava26650.m1 Manihot esculenta cassava26650.m1 N
MTR_0140s0010 Medicago truncatula MTR_0140s0010 I
MTR_5g024070 Medicago truncatula MTR_5g024070 N
GSMUA_Achr8G13370_001 Musa acuminata GSMUA_Achr8G13370_001 N
POPTR_0005s10400 Populus trichocarpa POPTR_0005s10400 N
Pm026816 Prunus mume Pm026816 N
PRUPE_ppa011563mg Prunus persica PRUPE_ppa011563mg N
29830.m001444 Ricinus communis 29830.m001444 N
SapurV1A.0085s0060 Salix purpurea SapurV1A.0085s0060 N
SELMODRAFT_73109 Selaginella moellendorffii SELMODRAFT_73109 N
SELMODRAFT_73110 Selaginella moellendorffii SELMODRAFT_73110 N
SELMODRAFT_73113 Selaginella moellendorffii SELMODRAFT_73113 N
TCM_000070 Theobroma cacao TCM_000070 N
VIT_04s0044g00060 Vitis vinifera VIT_04s0044g00060 N