Scas_Contig664.4 (Saccharomyces castellii)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Scas_Contig664.4 T259272_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SMP1
M01557_2.00 		Saccharomyces cerevisiae
TTAATAAA
TTTATTAA		 PBM
Zhu et al.(2009)
Smp1 		0.896 0.896
SMP1
M08587_2.00 		Saccharomyces cerevisiae
BNDBMYWYAATTRWRNNWVNN
NNBWNNYWYAATTRWRKVHNV		 Misc
DeBoer et al.(2011)
YBR182C_864 		0.896 0.896
RLM1
M08590_2.00 		Saccharomyces cerevisiae
NTAWWWWTAG
CTAWWWWTAN		 Misc
DeBoer et al.(2011)
YPL089C_419 		0.875 0.875
RLM1
M08459_2.00 		Saccharomyces cerevisiae
NDWTCTAWWWATAGMYHN
NDRKCTATWWWTAGAWHN		 COMPILED
Mathelier et al.(2014)
MA0369.1 		0.875 0.875
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Scas_Contig664.4 MADS box 10 57

Links

Other MADS box family TFs
Other Saccharomyces castellii TFs

173 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000010612 Ailuropoda melanoleuca ENSAMEG00000010612 I 0.000
ENSAMEG00000017162 Ailuropoda melanoleuca ENSAMEG00000017162 I 0.000
Alligator_sinensis_CCG017304.1 Alligator sinensis Alligator_sinensis_CCG017304.1 I 0.000
Alligator_sinensis_CCG017823.1 Alligator sinensis Alligator_sinensis_CCG017823.1 I 0.000
ENSAPLG00000011135 Anas platyrhynchos ENSAPLG00000011135 I 0.000
TCF4 Anolis carolinensis ENSACAG00000008863 I 0.000
TCF12 Anolis carolinensis ENSACAG00000014277 I 0.000
ENSACAG00000027602 Anolis carolinensis ENSACAG00000027602 I 0.000
Afo_R000660 Aptenodytes forsteri Afo_R000660 I 0.000
Afo_R014990 Aptenodytes forsteri Afo_R014990 I 0.000
ENSAMXG00000009833 Astyanax mexicanus ENSAMXG00000009833 I 0.000
ENSAMXG00000014804 Astyanax mexicanus ENSAMXG00000014804 I 0.000
ENSBTAP00000048638-D1 Bos grunniens ENSBTAP00000048638-D1 I 0.000
ENSP00000381382-D1 Bos grunniens ENSP00000381382-D1 I 0.000
TCF12 Bos taurus ENSBTAG00000002586 I 0.000
TCF3 Bos taurus ENSBTAG00000008695 I 0.000
TCF4 Bos taurus ENSBTAG00000016462 I 0.000
TCF4 Callithrix jacchus ENSCJAG00000004038 I 0.000
TCF3 Callithrix jacchus ENSCJAG00000004642 I 0.000
Aan_R011985 Calypte anna Aan_R011985 I 0.000
TCF4 Canis familiaris ENSCAFG00000000140 I 0.000
TCF12 Canis familiaris ENSCAFG00000016200 I 0.000
TCF12 Cavia porcellus ENSCPOG00000009153 I 0.000
Cmyd_10006705 Chelonia mydas Cmyd_10006705 I 0.000
Cmyd_10020160 Chelonia mydas Cmyd_10020160 I 0.000
ENSCSAG00000011901 Chlorocebus sabaeus ENSCSAG00000011901 I 0.000
ENSCSAG00000018141 Chlorocebus sabaeus ENSCSAG00000018141 I 0.000
TCF4 Choloepus hoffmanni ENSCHOG00000000331 I 0.000
TCF12 Choloepus hoffmanni ENSCHOG00000003168 I 0.000
tcf12 Danio rerio ENSDARG00000004714 I 0.000
ENSDNOG00000013859 Dasypus novemcinctus ENSDNOG00000013859 I 0.000
ENSDNOG00000042880 Dasypus novemcinctus ENSDNOG00000042880 I 0.000
Tcf4 Dipodomys ordii ENSDORG00000012697 I 0.000
EmuJ_000995700 Echinococcus multilocularis EmuJ_000995700 N 0.000
TCF3 Equus caballus ENSECAG00000000623 I 0.000
TCF12 Equus caballus ENSECAG00000011678 I 0.000
TCF4 Equus caballus ENSECAG00000017265 I 0.000
TCF4 Erinaceus europaeus ENSEEUG00000000134 I 0.000
TCF12 Erinaceus europaeus ENSEEUG00000002182 I 0.000
TCF4 Felis catus ENSFCAG00000014682 I 0.000
TCF3 Felis catus ENSFCAG00000023514 I 0.000
TCF12 Felis catus ENSFCAG00000031674 I 0.000
ENSFALG00000012146 Ficedula albicollis ENSFALG00000012146 I 0.000
ENSGMOG00000015710 Gadus morhua ENSGMOG00000015710 I 0.000
ENSGMOG00000018104 Gadus morhua ENSGMOG00000018104 I 0.000
TCF3 Gallus gallus ENSGALG00000001093 I 0.000
TCF12 Gallus gallus ENSGALG00000004304 I 0.000
ENSGACG00000000628 Gasterosteus aculeatus ENSGACG00000000628 I 0.000
TCF12 Gasterosteus aculeatus ENSGACG00000006101 I 0.000
tcf12 Gasterosteus aculeatus ENSGACG00000015831 I 0.000
Gfo_R004309 Geospiza fortis Gfo_R004309 I 0.000
TCF3 Gorilla gorilla ENSGGOG00000003667 I 0.000
TCF12 Gorilla gorilla ENSGGOG00000008166 I 0.000
TCF4 Gorilla gorilla ENSGGOG00000016297 I 0.000
TCF3 Homo sapiens ENSG00000071564 D 0.000
TCF12 Homo sapiens ENSG00000140262 D 0.000
TCF4 Homo sapiens ENSG00000196628 D 0.000
XP_002153906.1 Hydra magnipapillata XP_002153906.1 I 0.000
ENSSTOG00000001523 Ictidomys tridecemlineatus ENSSTOG00000001523 I 0.000
ENSSTOG00000005134 Ictidomys tridecemlineatus ENSSTOG00000005134 I 0.000
ENSLACG00000003485 Latimeria chalumnae ENSLACG00000003485 I 0.000
ENSLACG00000014145 Latimeria chalumnae ENSLACG00000014145 I 0.000
ENSLOCG00000003538 Lepisosteus oculatus ENSLOCG00000003538 I 0.000
ENSLOCG00000013539 Lepisosteus oculatus ENSLOCG00000013539 I 0.000
TCF12 Loxodonta africana ENSLAFG00000010546 I 0.000
TCF4 Loxodonta africana ENSLAFG00000013449 I 0.000
TCF3 Loxodonta africana ENSLAFG00000026277 I 0.000
ENSP00000331057 Macaca fascicularis ENSP00000331057 I 0.000
ENSP00000381382 Macaca fascicularis ENSP00000381382 I 0.000
TCF12 Macaca mulatta ENSMMUG00000004091 I 0.000
TCF3 Macaca mulatta ENSMMUG00000009017 I 0.000
TCF4 Macaca mulatta ENSMMUG00000012001 I 0.000
ENSMEUG00000003794 Macropus eugenii ENSMEUG00000003794 I 0.000
TCF3 Meleagris gallopavo ENSMGAG00000002388 I 0.000
ENSMGAG00000005667 Meleagris gallopavo ENSMGAG00000005667 I 0.000
MCOS_0000890701 Mesocestoides corti MCOS_0000890701 N 0.000
TCF12 Microcebus murinus ENSMICG00000009110 I 0.000
TCF4 Microcebus murinus ENSMICG00000012305 I 0.000
ML223014a Mnemiopsis leidyi ML223014a N 0.000
TCF12 Monodelphis domestica ENSMODG00000008311 I 0.000
TCF4 Monodelphis domestica ENSMODG00000020455 I 0.000
ENSMPUG00000004438 Mustela putorius furo ENSMPUG00000004438 I 0.000
ENSMPUG00000016460 Mustela putorius furo ENSMPUG00000016460 I 0.000
Tcf3 Mus musculus ENSMUSG00000020167 D 0.000
Tcf12 Mus musculus ENSMUSG00000032228 D 0.000
Tcf4 Mus musculus ENSMUSG00000053477 D 0.000
Myotis_brandtii_Tcf12_10010436 Myotis brandtii Myotis_brandtii_Tcf12_10010436 I 0.000
Myotis_brandtii_Tcf4_10017301 Myotis brandtii Myotis_brandtii_Tcf4_10017301 I 0.000
TCF12 Myotis lucifugus ENSMLUG00000006205 I 0.000
ENSMLUG00000012927 Myotis lucifugus ENSMLUG00000012927 I 0.000
ENSNLEG00000006707 Nomascus leucogenys ENSNLEG00000006707 I 0.000
ENSNLEG00000007981 Nomascus leucogenys ENSNLEG00000007981 I 0.000
SNAPOd2T00003591001 Oikopleura dioica SNAPOd2T00003591001 I 0.000
Ogr01317 Ophisaurus gracilis Ogr01317 I 0.000
Ogr02020 Ophisaurus gracilis Ogr02020 I 0.000
Ogr11405 Ophisaurus gracilis Ogr11405 I 0.000
ENSONIG00000005794 Oreochromis niloticus ENSONIG00000005794 I 0.000
ENSONIG00000008337 Oreochromis niloticus ENSONIG00000008337 I 0.000
ENSONIG00000012720 Oreochromis niloticus ENSONIG00000012720 I 0.000
TCF4 Ornithorhynchus anatinus ENSOANG00000003082 I 0.000
TCF12 Ornithorhynchus anatinus ENSOANG00000009462 I 0.000
TCF4 Oryctolagus cuniculus ENSOCUG00000002669 I 0.000
TCF12 Oryctolagus cuniculus ENSOCUG00000017812 I 0.000
TCF12 Oryzias latipes ENSORLG00000005330 I 0.000
tcf12 Oryzias latipes ENSORLG00000008508 I 0.000
ENSORLG00000015062 Oryzias latipes ENSORLG00000015062 I 0.000
ENSOGAG00000005735 Otolemur garnettii ENSOGAG00000005735 I 0.000
TCF12 Otolemur garnettii ENSOGAG00000006485 I 0.000
ENSOARG00000005018 Ovis aries ENSOARG00000005018 I 0.000
ENSOARG00000020872 Ovis aries ENSOARG00000020872 I 0.000
TCF12 Pan troglodytes ENSPTRG00000007109 I 0.000
TCF4 Pan troglodytes ENSPTRG00000010040 I 0.000
ENSPANG00000016063 Papio anubis ENSPANG00000016063 I 0.000
ENSPANG00000017265 Papio anubis ENSPANG00000017265 I 0.000
ENSPSIG00000011880 Pelodiscus sinensis ENSPSIG00000011880 I 0.000
ENSPSIG00000014469 Pelodiscus sinensis ENSPSIG00000014469 I 0.000
ENSPMAG00000000958 Petromyzon marinus ENSPMAG00000000958 I 0.000
ENSPFOG00000004140 Poecilia formosa ENSPFOG00000004140 I 0.000
ENSPFOG00000009937 Poecilia formosa ENSPFOG00000009937 I 0.000
ENSPFOG00000024249 Poecilia formosa ENSPFOG00000024249 I 0.000
Pvit_17395 Pogona vitticeps Pvit_17395 I 0.000
Pvit_19114 Pogona vitticeps Pvit_19114 I 0.000
ENSPPYG00000006505 Pongo abelii ENSPPYG00000006505 I 0.000
ENSPPYG00000009175 Pongo abelii ENSPPYG00000009175 I 0.000
TCF4 Pteropus vampyrus ENSPVAG00000002074 I 0.000
TCF12 Pteropus vampyrus ENSPVAG00000006184 I 0.000
Tcf4 Rattus norvegicus ENSRNOG00000012405 I 0.000
Tcf3 Rattus norvegicus ENSRNOG00000051499 I 0.000
Tcf12 Rattus norvegicus ENSRNOG00000057754 I 0.000
Sakowv30044282m.g Saccoglossus kowalevskii Sakowv30044282m.g I 0.000
ENSSHAG00000014955 Sarcophilus harrisii ENSSHAG00000014955 I 0.000
ENSSHAG00000015935 Sarcophilus harrisii ENSSHAG00000015935 I 0.000
SMU15033380 Schmidtea mediterranea SMU15033380 N 0.000
TCF12 Sorex araneus ENSSARG00000013798 I 0.000
TCF4 Sus scrofa ENSSSCG00000004535 I 0.000
TCF12 Taeniopygia guttata ENSTGUG00000006270 I 0.000
ENSTRUG00000002569 Takifugu rubripes ENSTRUG00000002569 I 0.000
TCF12 Takifugu rubripes ENSTRUG00000008110 I 0.000
tcf12 Takifugu rubripes ENSTRUG00000017855 I 0.000
ENSTSYG00000009264 Tarsius syrichta ENSTSYG00000009264 I 0.000
ENSTSYG00000009542 Tarsius syrichta ENSTSYG00000009542 I 0.000
tetur02g08700 Tetranychus urticae tetur02g08700 I 0.000
tcf12 Tetraodon nigroviridis ENSTNIG00000009326 I 0.000
ENSTNIG00000010330 Tetraodon nigroviridis ENSTNIG00000010330 I 0.000
ENSTNIG00000013705 Tetraodon nigroviridis ENSTNIG00000013705 I 0.000
TriadG8076 Trichoplax adhaerens TriadG8076 N 0.000
TCF12 Tupaia belangeri ENSTBEG00000002192 I 0.000
TCF4 Tupaia belangeri ENSTBEG00000015498 I 0.000
TCF12 Tursiops truncatus ENSTTRG00000010817 I 0.000
TCF4 Tursiops truncatus ENSTTRG00000011542 I 0.000
TCF12 Vicugna pacos ENSVPAG00000006545 I 0.000
tcf4.S Xenopus laevis XB-GENE-1011632 I 0.000
tcf12.L Xenopus laevis XB-GENE-5799717 I 0.000
tcf4 Xenopus tropicalis XB-GENE-1011628 I 0.000
tcf3 Xenopus tropicalis XB-GENE-478265 I 0.000
tcf12 Xenopus tropicalis XB-GENE-5799694 I 0.000
ENSXMAG00000011822 Xiphophorus maculatus ENSXMAG00000011822 I 0.000
ENSXMAG00000014303 Xiphophorus maculatus ENSXMAG00000014303 I 0.000