MLOC_68189 (Hordeum vulgare)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 MLOC_68189 T274565_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.909 0.978
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.901 0.957
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.901 0.957
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.901 0.957
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.901 0.957
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.901 0.957
RVE6
M01081_2.00 		Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151 		0.899 0.957
RVE6
M07138_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a 		0.899 0.957
RVE6
M07139_2.00 		Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a 		0.899 0.957
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.818 0.870
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.803 0.913
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.803 0.913
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.803 0.913
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.706 0.696
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.670 0.652
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.670 0.652
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.670 0.652
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MLOC_68189.1 Myb 35 80
MLOC_68189.2 Myb 35 80
MLOC_68189.3 Myb 35 80
MLOC_68189.4 Myb 35 80
MLOC_68189.5 Myb 35 80
MLOC_68189.7 Myb 35 80
MLOC_68189.8 Myb 35 80
MLOC_68189.9 Myb 35 80

Links

Other Myb/SANT family TFs
Other Hordeum vulgare TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACOC_0000915001 Angiostrongylus costaricensis ACOC_0000915001 I
ASU_01844 Ascaris suum ASU_01844 I
Bm4783 Brugia malayi Bm4783 I
Bm8986 Brugia malayi Bm8986 I
BXY_1419700 Bursaphelenchus xylophilus BXY_1419700 I
CBN20375 Caenorhabditis brenneri CBN20375 I
CBG14292 Caenorhabditis briggsae CBG14292 D
fkh-9 Caenorhabditis elegans WBGene00001441 D
CJA08800 Caenorhabditis japonica CJA08800 I
CRE00363 Caenorhabditis remanei CRE00363 I
nDi.2.2.2.g08148 Dirofilaria immitis nDi.2.2.2.g08148 I
EEL_0001062601 Elaeophora elaphi EEL_0001062601 I
GPLIN_000643600 Globodera pallida GPLIN_000643600 I
HPBE_0000630601 Heligmosomoides bakeri HPBE_0000630601 I
nLs.2.1.2.g09806 Litomosoides sigmodontis nLs.2.1.2.g09806 I
LOAG_12342 Loa loa LOAG_12342 I
augustus_masked-nMf.1.1.scaf24077-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf24077-processed-gene-0.0 I
augustus_masked-nMf.1.1.scaf03615-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf03615-processed-gene-0.0 I
MhA1_Contig2150.frz3.gene5 Meloidogyne hapla MhA1_Contig2150.frz3.gene5 I
Minc17526 Meloidogyne incognita Minc17526 I
NECAME_09893 Necator americanus NECAME_09893 I
OESDEN_00259 Oesophagostomum dentatum OESDEN_00259 I
WBGene00240171 Onchocerca volvulus WBGene00240171 I
PTRK_0001396400 Parastrongyloides trichosuri PTRK_0001396400 I
RSKR_0000258500 Rhabditophanes kr3021 RSKR_0000258500 I
L596_g16187 Steinernema carpocapsae L596_g16187 I
L889_g19578 Steinernema feltiae L889_g19578 I
L898_g14202 Steinernema monticolum L898_g14202 I
L892_g2712 Steinernema scapterisci L892_g2712 I
SPAL_0000170000 Strongyloides papillosus SPAL_0000170000 I
SSTP_0001187300 Strongyloides stercoralis SSTP_0001187300 I
SMUV_0001043901 Syphacia muris SMUV_0001043901 I
TELCIR_11030 Teladorsagia circumcincta TELCIR_11030 I
TCLT_0000649001 Thelazia callipaeda TCLT_0000649001 I
WUBG_05169 Wuchereria bancrofti WUBG_05169 I