POPTR_0001s36220 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0001s36220 T278206_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AtMYB40
M07126_2.00 		Arabidopsis thaliana
YYYACCWAMYHHH
DDDRKTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB40_col_a 		0.757 0.839
MYB43
M07127_2.00 		Arabidopsis thaliana
NYYYACCWAMYWH
DWRKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB43_col_a 		0.691 0.753
PK21166.1
M01281_2.00 		Cannabis sativa
HACCWAMY
RKTWGGTD		 PBM
Lambert et al.(2019)
pTH11255 		0.667 0.753
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s36220.1 Myb 14 61
POPTR_0001s36220.1 Myb 67 112

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

197 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OBART05G16420 Oryza barthii OBART05G16420 N
ORGLA05G0141800 Oryza glaberrima ORGLA05G0141800 N
OGLUM05G17430 Oryza glumaepatula OGLUM05G17430 N
ONIVA05G17110 Oryza nivara ONIVA05G17110 N
OPUNC05G14500 Oryza punctata OPUNC05G14500 N
ORUFI05G17650 Oryza rufipogon ORUFI05G17650 N
OS05G0413000 Oryza sativa OS05G0413000 N