POPTR_0001s36220 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0001s36220 T278206_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AtMYB40
M07126_2.00 		Arabidopsis thaliana
YYYACCWAMYHHH
DDDRKTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB40_col_a 		0.757 0.839
MYB43
M07127_2.00 		Arabidopsis thaliana
NYYYACCWAMYWH
DWRKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB43_col_a 		0.691 0.753
PK21166.1
M01281_2.00 		Cannabis sativa
HACCWAMY
RKTWGGTD		 PBM
Lambert et al.(2019)
pTH11255 		0.667 0.753
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s36220.1 Myb 14 61
POPTR_0001s36220.1 Myb 67 112

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

197 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.supercontig_1097.3 Carica papaya evm.TU.supercontig_1097.3 I 0.889
SapurV1A.0136s0070 Salix purpurea SapurV1A.0136s0070 I 0.876
cassava3745.m1 Manihot esculenta cassava3745.m1 I 0.874
AtMYB40 Vitis vinifera VIT_14s0219g00050 I 0.873
mgf018940m Mimulus guttatus mgf018940m I 0.873
Eucgr.I01698 Eucalyptus grandis Eucgr.I01698 I 0.872
cassava17364.m1 Manihot esculenta cassava17364.m1 I 0.866
Eucgr.J02279 Eucalyptus grandis Eucgr.J02279 I 0.866
TCM_017051 Theobroma cacao TCM_017051 I 0.857
Gorai.006G037500 Gossypium raimondii Gorai.006G037500 I 0.857
Aquca_011_00323 Aquilegia coerulea Aquca_011_00323 I 0.853
PGSC0003DMG400012648 Solanum tuberosum PGSC0003DMG400012648 I 0.850
Solyc02g093740.2 Solanum lycopersicum Solyc02g093740.2 I 0.850
Gorai.007G074500 Gossypium raimondii Gorai.007G074500 I 0.849
Lus10032117.g Linum usitatissimum Lus10032117.g I 0.847
MDP0000241111 Malus domestica MDP0000241111 I 0.847
MDP0000303239 Malus domestica MDP0000303239 I 0.847
Ca_19393 Cicer arietinum Ca_19393 I 0.843
GLYMA16G06900 Glycine max GLYMA16G06900 I 0.842
29929.m004749 Ricinus communis 29929.m004749 I 0.841
PRUPE_ppa026877mg Prunus persica PRUPE_ppa026877mg I 0.836
Pm015564 Prunus mume Pm015564 I 0.836
gene28021-v1.0-hybrid Fragaria vesca gene28021-v1.0-hybrid I 0.836
GLYMA19G07830 Glycine max GLYMA19G07830 I 0.828
Lus10014569.g Linum usitatissimum Lus10014569.g I 0.822
GLYMA05G06410 Glycine max GLYMA05G06410 I 0.816
Ciclev10017764m.g Citrus clementina Ciclev10017764m.g I 0.816
Cla004104 Citrullus lanatus Cla004104 I 0.815
Cucsa.156340 Cucumis sativus Cucsa.156340 I 0.815
Gorai.001G268000 Gossypium raimondii Gorai.001G268000 I 0.802
Solyc05g014290.2 Solanum lycopersicum Solyc05g014290.2 I 0.800
Aquca_011_00322 Aquilegia coerulea Aquca_011_00322 I 0.798
cassava15064.m1 Manihot esculenta cassava15064.m1 I 0.794
GSMUA_Achr6G06800_001 Musa acuminata GSMUA_Achr6G06800_001 I 0.789
Bo3g009730 Brassica oleracea Bo3g009730 I 0.776
Bra006249 Brassica rapa Bra006249 I 0.776
Bra008764 Brassica rapa Bra008764 I 0.776
PGSC0003DMG400011976 Solanum tuberosum PGSC0003DMG400011976 I 0.776
Bo9g166000 Brassica oleracea Bo9g166000 I 0.767
AtMYB40 Arabidopsis thaliana AT5G14340 D 0.757
Bostr.2902s0170 Boechera stricta Bostr.2902s0170 I 0.757
Cagra.3166s0041 Capsella grandiflora Cagra.3166s0041 I 0.757
SapurV1A.0206s0260 Salix purpurea SapurV1A.0206s0260 I 0.757
Thhalv10014425m.g Eutrema salsugineum Thhalv10014425m.g I 0.757
mgf025004m Mimulus guttatus mgf025004m I 0.754
AMTR_s00049p00074250 Amborella trichopoda AMTR_s00049p00074250 I 0.745
GSMUA_AchrUn_randomG11880_001 Musa acuminata GSMUA_AchrUn_randomG11880_001 N 0.745
AtMYB40 Populus trichocarpa POPTR_0008s18110 I 0.729
Bo4g101470 Brassica oleracea Bo4g101470 I 0.724
Solyc04g014470.2 Solanum lycopersicum Solyc04g014470.2 I 0.700
GSMUA_Achr7G12520_001 Musa acuminata GSMUA_Achr7G12520_001 I 0.697
PGSC0003DMG400015668 Solanum tuberosum PGSC0003DMG400015668 I 0.697
Solyc11g011050.1 Solanum lycopersicum Solyc11g011050.1 I 0.697
MYB43 Arabidopsis thaliana AT5G16600 D 0.691
MYB43 Arabidopsis lyrata scaffold_601700.1 I 0.691
Bostr.2902s0397 Boechera stricta Bostr.2902s0397 I 0.691
Cagra.0434s0026 Capsella grandiflora Cagra.0434s0026 I 0.691
Carubv10001378m.g Capsella rubella Carubv10001378m.g I 0.691
Si031939m.g Setaria italica Si031939m.g I 0.686
Pavir.Ba02150 Panicum virgatum Pavir.Ba02150 I 0.686
Pavir.Bb01873 Panicum virgatum Pavir.Bb01873 I 0.686
Pavir.J21364 Panicum virgatum Pavir.J21364 I 0.686
Aquca_013_00661 Aquilegia coerulea Aquca_013_00661 I 0.684
Gorai.006G064000 Gossypium raimondii Gorai.006G064000 I 0.683
GSMUA_Achr4G19880_001 Musa acuminata GSMUA_Achr4G19880_001 I 0.682
MTR_4g102380 Medicago truncatula MTR_4g102380 I 0.682
Ca_08722 Cicer arietinum Ca_08722 I 0.682
PK08857.1 Cannabis sativa PK08857.1 I 0.682
chr4.CM0126.370.nd Lotus japonicus chr4.CM0126.370.nd I 0.682
GSMUA_Achr9G15640_001 Musa acuminata GSMUA_Achr9G15640_001 I 0.680
MDP0000787808 Malus domestica MDP0000787808 I 0.679
Bo2g013190 Brassica oleracea Bo2g013190 I 0.678
GLYMA01G42050 Glycine max GLYMA01G42050 I 0.678
GLYMA05G03780 Glycine max GLYMA05G03780 I 0.678
GLYMA11G03300 Glycine max GLYMA11G03300 I 0.678
GLYMA17G14291 Glycine max GLYMA17G14291 I 0.678
PGSC0003DMG400004780 Solanum tuberosum PGSC0003DMG400004780 I 0.678
POPTR_0001s07830 Populus trichocarpa POPTR_0001s07830 I 0.678
POPTR_0003s11360 Populus trichocarpa POPTR_0003s11360 I 0.678
POPTR_0015s14600 Populus trichocarpa POPTR_0015s14600 I 0.678
PRUPE_ppa021568mg Prunus persica PRUPE_ppa021568mg I 0.678
Solyc08g079270.2 Solanum lycopersicum Solyc08g079270.2 I 0.678
TCM_014956 Theobroma cacao TCM_014956 I 0.678
TCM_016054 Theobroma cacao TCM_016054 I 0.678
VIT_00s1241g00010 Vitis vinifera VIT_00s1241g00010 I 0.678
VIT_16s0022g01210 Vitis vinifera VIT_16s0022g01210 I 0.678
Cla003626 Citrullus lanatus Cla003626 I 0.678
Cla011736 Citrullus lanatus Cla011736 I 0.678
Pm023573 Prunus mume Pm023573 I 0.678
30190.m011004 Ricinus communis 30190.m011004 I 0.678
cassava2058.valid.m1 Manihot esculenta cassava2058.valid.m1 I 0.678
cassava33331.m1 Manihot esculenta cassava33331.m1 I 0.678
cassava47045.m1 Manihot esculenta cassava47045.m1 I 0.678
Cucsa.302180 Cucumis sativus Cucsa.302180 I 0.678
mgf017719m Mimulus guttatus mgf017719m I 0.678
Bostr.25463s0081 Boechera stricta Bostr.25463s0081 I 0.678
Cagra.14303s0002 Capsella grandiflora Cagra.14303s0002 I 0.678
Carubv10003172m.g Capsella rubella Carubv10003172m.g I 0.678
Ciclev10005666m.g Citrus clementina Ciclev10005666m.g I 0.678
Ciclev10021695m.g Citrus clementina Ciclev10021695m.g I 0.678
Eucgr.D02014 Eucalyptus grandis Eucgr.D02014 I 0.678
evm.TU.supercontig_3.300 Carica papaya evm.TU.supercontig_3.300 I 0.678
gene32268-v1.0-hybrid Fragaria vesca gene32268-v1.0-hybrid I 0.678
Gorai.003G168100 Gossypium raimondii Gorai.003G168100 I 0.678
Gorai.004G201900 Gossypium raimondii Gorai.004G201900 I 0.678
Gorai.008G238800 Gossypium raimondii Gorai.008G238800 I 0.678
Lus10024589.g Linum usitatissimum Lus10024589.g I 0.678
Lus10027197.g Linum usitatissimum Lus10027197.g I 0.678
Lus10032226.g Linum usitatissimum Lus10032226.g I 0.678
Lus10038913.g Linum usitatissimum Lus10038913.g I 0.678
MDP0000682032 Malus domestica MDP0000682032 I 0.678
orange1.1g024441m.g Citrus sinensis orange1.1g024441m.g I 0.678
orange1.1g024849m.g Citrus sinensis orange1.1g024849m.g I 0.678
SapurV1A.0045s0090 Salix purpurea SapurV1A.0045s0090 I 0.678
SapurV1A.0367s0020 Salix purpurea SapurV1A.0367s0020 I 0.678
SapurV1A.0456s0310 Salix purpurea SapurV1A.0456s0310 I 0.678
SapurV1A.0634s0020 Salix purpurea SapurV1A.0634s0020 I 0.678
Si030711m.g Setaria italica Si030711m.g I 0.677
Si032544m.g Setaria italica Si032544m.g I 0.677
fgenesh1_pg.scaffold_420000003 Physcomitrella patens fgenesh1_pg.scaffold_420000003 I 0.675
Bo9g163020 Brassica oleracea Bo9g163020 I 0.674
Thhalv10014086m.g Eutrema salsugineum Thhalv10014086m.g I 0.674
PDK_20s1306131g002 Phoenix dactylifera PDK_20s1306131g002 I 0.674
Pavir.Da01229 Panicum virgatum Pavir.Da01229 I 0.673
Lus10004042.g Linum usitatissimum Lus10004042.g I 0.672
PRUPE_ppa011549mg Prunus persica PRUPE_ppa011549mg I 0.668
Pm019472 Prunus mume Pm019472 I 0.668
Gorai.006G195700 Gossypium raimondii Gorai.006G195700 I 0.668
MDP0000602739 Malus domestica MDP0000602739 I 0.668
Bo6g099800 Brassica oleracea Bo6g099800 I 0.667
Bra004155 Brassica rapa Bra004155 I 0.667
GLYMA02G41180 Glycine max GLYMA02G41180 I 0.667
GLYMA11G33620 Glycine max GLYMA11G33620 I 0.667
GLYMA14G39530 Glycine max GLYMA14G39530 I 0.667
GLYMA18G04580 Glycine max GLYMA18G04580 I 0.667
GRMZM2G106558 Zea mays GRMZM2G106558 I 0.667
GSMUA_Achr5G23110_001 Musa acuminata GSMUA_Achr5G23110_001 I 0.667
MTR_3g065440 Medicago truncatula MTR_3g065440 I 0.667
MTR_5g078140 Medicago truncatula MTR_5g078140 I 0.667
POPTR_0004s08480 Populus trichocarpa POPTR_0004s08480 I 0.667
POPTR_0017s02850 Populus trichocarpa POPTR_0017s02850 I 0.667
PRUPE_ppa009966mg Prunus persica PRUPE_ppa009966mg I 0.667
MYB20 Arabidopsis lyrata scaffold_201335.1 I 0.667
TCM_019116 Theobroma cacao TCM_019116 I 0.667
MYB43 Vitis vinifera VIT_14s0006g00450 I 0.667
Ca_13286 Cicer arietinum Ca_13286 I 0.667
Pm013020 Prunus mume Pm013020 I 0.667
cassava6251.valid.m1 Manihot esculenta cassava6251.valid.m1 I 0.667
Cucsa.006170 Cucumis sativus Cucsa.006170 I 0.667
Cucsa.375180 Cucumis sativus Cucsa.375180 I 0.667
Bostr.26959s0295 Boechera stricta Bostr.26959s0295 I 0.667
Cagra.1300s0004 Capsella grandiflora Cagra.1300s0004 I 0.667
Carubv10020766m.g Capsella rubella Carubv10020766m.g I 0.667
Ciclev10012265m.g Citrus clementina Ciclev10012265m.g I 0.667
Eucgr.F02864 Eucalyptus grandis Eucgr.F02864 I 0.667
Eucgr.J01601 Eucalyptus grandis Eucgr.J01601 I 0.667
gene30520-v1.0-hybrid Fragaria vesca gene30520-v1.0-hybrid I 0.667
Gorai.001G205300 Gossypium raimondii Gorai.001G205300 I 0.667
Gorai.004G064100 Gossypium raimondii Gorai.004G064100 I 0.667
Gorai.008G060100 Gossypium raimondii Gorai.008G060100 I 0.667
orange1.1g021498m.g Citrus sinensis orange1.1g021498m.g I 0.667
Pavir.Fb01563 Panicum virgatum Pavir.Fb01563 I 0.667
SapurV1A.0102s0470 Salix purpurea SapurV1A.0102s0470 I 0.667
SapurV1A.0390s0060 Salix purpurea SapurV1A.0390s0060 I 0.667
SapurV1A.1318s0060 Salix purpurea SapurV1A.1318s0060 I 0.667
Thhalv10019852m.g Eutrema salsugineum Thhalv10019852m.g I 0.667
PK21166.1 Cannabis sativa PK21166.1 D 0.667
BGIOSGA029380 Oryza indica BGIOSGA029380 I 0.665
Bo3g165540 Brassica oleracea Bo3g165540 I 0.665
GRMZM2G037650 Zea mays GRMZM2G037650 I 0.665
GRMZM2G104551 Zea mays GRMZM2G104551 I 0.665
GRMZM2G138427 Zea mays GRMZM2G138427 I 0.665
OB09G24070 Oryza brachyantha OB09G24070 I 0.665
OLONG_005336 Oryza longistaminata OLONG_005336 I 0.665
ORGLA09G0137500 Oryza glaberrima ORGLA09G0137500 I 0.665
OS09G0532900 Oryza sativa OS09G0532900 I 0.665
Sb02g030900 Sorghum bicolor Sb02g030900 I 0.665
Si030750m.g Setaria italica Si030750m.g I 0.665
estExt_gwp_gw1.C_780109 Physcomitrella patens estExt_gwp_gw1.C_780109 N 0.665
Pavir.Ba01239 Panicum virgatum Pavir.Ba01239 I 0.665
Pavir.Bb02654 Panicum virgatum Pavir.Bb02654 I 0.665
Pavir.Fb02321 Panicum virgatum Pavir.Fb02321 I 0.665
Pavir.J36915 Panicum virgatum Pavir.J36915 I 0.665
cassava21367.m1 Manihot esculenta cassava21367.m1 I 0.664
cassava30009.valid.m1 Manihot esculenta cassava30009.valid.m1 I 0.664
Pavir.Fa00850 Panicum virgatum Pavir.Fa00850 I 0.664
MYB20 Arabidopsis thaliana AT1G66230 I 0.662
BGIOSGA026529 Oryza indica BGIOSGA026529 I 0.662
BRADI3G42430 Brachypodium distachyon BRADI3G42430 I 0.662
F775_19511 Aegilops tauschii F775_19511 I 0.662
OB08G29480 Oryza brachyantha OB08G29480 I 0.662
ORGLA08G0217800 Oryza glaberrima ORGLA08G0217800 I 0.662
ORUFI08G25210 Oryza rufipogon ORUFI08G25210 I 0.662
Traes_5BL_30D8E6BE2 Triticum aestivum Traes_5BL_30D8E6BE2 I 0.662
Traes_5DL_0B2C5ADF6 Triticum aestivum Traes_5DL_0B2C5ADF6 I 0.662
GSMUA_Achr1G18610_001 Musa acuminata GSMUA_Achr1G18610_001 I 0.661
GSMUA_Achr7G05680_001 Musa acuminata GSMUA_Achr7G05680_001 I 0.661