PGSC0003DMG400011976 (Solanum tuberosum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 PGSC0003DMG400011976 T277593_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AtMYB40
M07126_2.00 		Arabidopsis thaliana
YYYACCWAMYHHH
DDDRKTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB40_col_a 		0.798 0.860
MYB43
M07127_2.00 		Arabidopsis thaliana
NYYYACCWAMYWH
DWRKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB43_col_a 		0.704 0.763
PK21166.1
M01281_2.00 		Cannabis sativa
HACCWAMY
RKTWGGTD		 PBM
Lambert et al.(2019)
pTH11255 		0.687 0.763
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400031250 Myb 14 61
PGSC0003DMT400031250 Myb 67 112

Links

Other Myb/SANT family TFs
Other Solanum tuberosum TFs

116 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc05g014290.2 Solanum lycopersicum Solyc05g014290.2 I 0.884
Gorai.001G268000 Gossypium raimondii Gorai.001G268000 I 0.827
Bra008764 Brassica rapa Bra008764 I 0.818
Gorai.006G037500 Gossypium raimondii Gorai.006G037500 I 0.813
TCM_017051 Theobroma cacao TCM_017051 I 0.813
mgf018940m Mimulus guttatus mgf018940m I 0.811
AtMYB40 Vitis vinifera VIT_14s0219g00050 I 0.811
Bo9g166000 Brassica oleracea Bo9g166000 I 0.809
Bra006249 Brassica rapa Bra006249 I 0.809
Bo3g009730 Brassica oleracea Bo3g009730 I 0.809
Solyc02g093740.2 Solanum lycopersicum Solyc02g093740.2 I 0.808
PGSC0003DMG400012648 Solanum tuberosum PGSC0003DMG400012648 I 0.808
Ciclev10017764m.g Citrus clementina Ciclev10017764m.g I 0.806
gene28021-v1.0-hybrid Fragaria vesca gene28021-v1.0-hybrid I 0.804
PRUPE_ppa026877mg Prunus persica PRUPE_ppa026877mg I 0.804
Eucgr.J02279 Eucalyptus grandis Eucgr.J02279 I 0.801
29929.m004749 Ricinus communis 29929.m004749 I 0.801
Thhalv10014425m.g Eutrema salsugineum Thhalv10014425m.g I 0.798
Cagra.3166s0041 Capsella grandiflora Cagra.3166s0041 I 0.798
Bostr.2902s0170 Boechera stricta Bostr.2902s0170 I 0.798
AtMYB40 Arabidopsis thaliana AT5G14340 D 0.798
GLYMA16G06900 Glycine max GLYMA16G06900 I 0.797
evm.TU.supercontig_1097.3 Carica papaya evm.TU.supercontig_1097.3 I 0.796
Eucgr.I01698 Eucalyptus grandis Eucgr.I01698 I 0.794
cassava17364.m1 Manihot esculenta cassava17364.m1 I 0.788
Pm015564 Prunus mume Pm015564 I 0.788
Cucsa.156340 Cucumis sativus Cucsa.156340 I 0.787
Cla004104 Citrullus lanatus Cla004104 I 0.787
Lus10032117.g Linum usitatissimum Lus10032117.g I 0.785
Lus10014569.g Linum usitatissimum Lus10014569.g I 0.785
MDP0000303239 Malus domestica MDP0000303239 I 0.784
MDP0000241111 Malus domestica MDP0000241111 I 0.784
GLYMA19G07830 Glycine max GLYMA19G07830 I 0.783
cassava3745.m1 Manihot esculenta cassava3745.m1 I 0.781
Ca_19393 Cicer arietinum Ca_19393 I 0.780
Aquca_011_00323 Aquilegia coerulea Aquca_011_00323 I 0.779
POPTR_0001s36220 Populus trichocarpa POPTR_0001s36220 I 0.776
mgf025004m Mimulus guttatus mgf025004m I 0.774
GLYMA05G06410 Glycine max GLYMA05G06410 I 0.768
Bo4g101470 Brassica oleracea Bo4g101470 I 0.765
Gorai.007G074500 Gossypium raimondii Gorai.007G074500 I 0.757
cassava15064.m1 Manihot esculenta cassava15064.m1 I 0.754
SapurV1A.0136s0070 Salix purpurea SapurV1A.0136s0070 I 0.749
Aquca_011_00322 Aquilegia coerulea Aquca_011_00322 I 0.742
Solyc11g011050.1 Solanum lycopersicum Solyc11g011050.1 I 0.734
PGSC0003DMG400015668 Solanum tuberosum PGSC0003DMG400015668 I 0.734
Solyc04g014470.2 Solanum lycopersicum Solyc04g014470.2 I 0.734
MYB43 Arabidopsis lyrata scaffold_601700.1 I 0.728
Carubv10001378m.g Capsella rubella Carubv10001378m.g I 0.728
Bostr.2902s0397 Boechera stricta Bostr.2902s0397 I 0.728
Cagra.0434s0026 Capsella grandiflora Cagra.0434s0026 I 0.728
GSMUA_Achr6G06800_001 Musa acuminata GSMUA_Achr6G06800_001 I 0.727
GSMUA_AchrUn_randomG11880_001 Musa acuminata GSMUA_AchrUn_randomG11880_001 N 0.721
Bo2g013190 Brassica oleracea Bo2g013190 I 0.715
AtMYB40 Populus trichocarpa POPTR_0008s18110 I 0.714
Thhalv10014086m.g Eutrema salsugineum Thhalv10014086m.g I 0.711
Bo9g163020 Brassica oleracea Bo9g163020 I 0.711
SapurV1A.0206s0260 Salix purpurea SapurV1A.0206s0260 I 0.711
AMTR_s00049p00074250 Amborella trichopoda AMTR_s00049p00074250 I 0.708
TCM_019116 Theobroma cacao TCM_019116 I 0.704
SapurV1A.0390s0060 Salix purpurea SapurV1A.0390s0060 I 0.704
GLYMA02G41180 Glycine max GLYMA02G41180 I 0.704
MTR_5g078140 Medicago truncatula MTR_5g078140 I 0.704
Gorai.008G060100 Gossypium raimondii Gorai.008G060100 I 0.704
Ciclev10012265m.g Citrus clementina Ciclev10012265m.g I 0.704
Gorai.004G064100 Gossypium raimondii Gorai.004G064100 I 0.704
MYB43 Arabidopsis thaliana AT5G16600 D 0.704
POPTR_0004s08480 Populus trichocarpa POPTR_0004s08480 I 0.704
SapurV1A.1318s0060 Salix purpurea SapurV1A.1318s0060 I 0.704
MTR_3g065440 Medicago truncatula MTR_3g065440 I 0.704
Ca_13286 Cicer arietinum Ca_13286 I 0.704
Pm013020 Prunus mume Pm013020 I 0.704
Gorai.001G205300 Gossypium raimondii Gorai.001G205300 I 0.704
GLYMA11G33620 Glycine max GLYMA11G33620 I 0.704
Eucgr.F02864 Eucalyptus grandis Eucgr.F02864 I 0.704
GLYMA14G39530 Glycine max GLYMA14G39530 I 0.704
cassava6251.valid.m1 Manihot esculenta cassava6251.valid.m1 I 0.704
Cucsa.006170 Cucumis sativus Cucsa.006170 I 0.704
POPTR_0017s02850 Populus trichocarpa POPTR_0017s02850 I 0.704
PRUPE_ppa009966mg Prunus persica PRUPE_ppa009966mg I 0.704
SapurV1A.0102s0470 Salix purpurea SapurV1A.0102s0470 I 0.704
orange1.1g021498m.g Citrus sinensis orange1.1g021498m.g I 0.704
GLYMA18G04580 Glycine max GLYMA18G04580 I 0.704
cassava30009.valid.m1 Manihot esculenta cassava30009.valid.m1 I 0.701
GSMUA_Achr10G29970_001 Musa acuminata GSMUA_Achr10G29970_001 I 0.699
Cla009311 Citrullus lanatus Cla009311 I 0.695
Pavir.J21364 Panicum virgatum Pavir.J21364 I 0.694
Cagra.1300s0004 Capsella grandiflora Cagra.1300s0004 I 0.690
Carubv10020766m.g Capsella rubella Carubv10020766m.g I 0.690
Bo6g099800 Brassica oleracea Bo6g099800 I 0.690
Bostr.26959s0295 Boechera stricta Bostr.26959s0295 I 0.690
Bra004155 Brassica rapa Bra004155 I 0.690
PK21166.1 Cannabis sativa PK21166.1 D 0.687
GSMUA_Achr5G23110_001 Musa acuminata GSMUA_Achr5G23110_001 I 0.687
MYB43 Vitis vinifera VIT_14s0006g00450 I 0.687
Thhalv10019852m.g Eutrema salsugineum Thhalv10019852m.g I 0.687
MYB20 Arabidopsis lyrata scaffold_201335.1 I 0.687
Cucsa.375180 Cucumis sativus Cucsa.375180 I 0.687
gene30520-v1.0-hybrid Fragaria vesca gene30520-v1.0-hybrid I 0.687
Lus10004042.g Linum usitatissimum Lus10004042.g I 0.685
MYB20 Arabidopsis thaliana AT1G66230 I 0.683
Eucgr.J01601 Eucalyptus grandis Eucgr.J01601 I 0.680
GSMUA_Achr9G15640_001 Musa acuminata GSMUA_Achr9G15640_001 I 0.676
Carubv10003172m.g Capsella rubella Carubv10003172m.g I 0.671
Cagra.14303s0002 Capsella grandiflora Cagra.14303s0002 I 0.671
GRMZM2G169356 Zea mays GRMZM2G169356 I 0.669
BGIOSGA030727 Oryza indica BGIOSGA030727 I 0.669
ORUFI09G10320 Oryza rufipogon ORUFI09G10320 I 0.669
ORGLA09G0071400 Oryza glaberrima ORGLA09G0071400 I 0.669
OS09G0401000 Oryza sativa OS09G0401000 I 0.669
Pavir.Bb01873 Panicum virgatum Pavir.Bb01873 I 0.669
Lus10002296.g Linum usitatissimum Lus10002296.g I 0.666
Lus10004043.g Linum usitatissimum Lus10004043.g I 0.666
BRADI3G36370 Brachypodium distachyon BRADI3G36370 I 0.665
GRMZM2G106558 Zea mays GRMZM2G106558 I 0.663
Pavir.Fb01563 Panicum virgatum Pavir.Fb01563 I 0.663