CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AtMYB40
(
Populus trichocarpa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
POPTR_0008s18110
T278358_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB99
M07151_2.00
Arabidopsis thaliana
NYYYACCWAMYHH
DDRKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB99_col_a
0.662
0.667
MYB99
M07152_2.00
Arabidopsis thaliana
YHYACCTAMYH
DRKTAGGTRDR
Dap-seq
OMalley et al.(2016)
MYB99_colamp_a
0.662
0.667
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0008s18110.1
Myb
14
61
RGTWSVEEDQKLMNFILSNGIKCWRHVPKLAGLLRCGKSCRLRWMNYL
POPTR_0008s18110.1
Myb
67
112
RGAFSEAEEDHLVELHSRLGNRWSKIAAFFPGRTDNEIKNHWNTRI
Links
Other
Myb/SANT
family TFs
Other
Populus trichocarpa
TFs
133 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SapurV1A.0206s0260
Salix purpurea
SapurV1A.0206s0260
I
0.851
cassava15064.m1
Manihot esculenta
cassava15064.m1
I
0.813
29929.m004749
Ricinus communis
29929.m004749
I
0.782
Gorai.006G037500
Gossypium raimondii
Gorai.006G037500
I
0.774
TCM_017051
Theobroma cacao
TCM_017051
I
0.774
Solyc02g093740.2
Solanum lycopersicum
Solyc02g093740.2
I
0.765
mgf018940m
Mimulus guttatus
mgf018940m
I
0.765
PGSC0003DMG400012648
Solanum tuberosum
PGSC0003DMG400012648
I
0.765
AtMYB40
Vitis vinifera
VIT_14s0219g00050
I
0.765
Eucgr.J02279
Eucalyptus grandis
Eucgr.J02279
I
0.762
SapurV1A.0136s0070
Salix purpurea
SapurV1A.0136s0070
I
0.762
Cucsa.156340
Cucumis sativus
Cucsa.156340
I
0.756
Cla004104
Citrullus lanatus
Cla004104
I
0.756
Eucgr.I01698
Eucalyptus grandis
Eucgr.I01698
I
0.755
Lus10032117.g
Linum usitatissimum
Lus10032117.g
I
0.750
cassava17364.m1
Manihot esculenta
cassava17364.m1
I
0.749
evm.TU.supercontig_1097.3
Carica papaya
evm.TU.supercontig_1097.3
I
0.749
GSMUA_Achr6G06800_001
Musa acuminata
GSMUA_Achr6G06800_001
I
0.748
Aquca_011_00323
Aquilegia coerulea
Aquca_011_00323
I
0.744
cassava3745.m1
Manihot esculenta
cassava3745.m1
I
0.743
Ca_19393
Cicer arietinum
Ca_19393
I
0.742
Ciclev10017764m.g
Citrus clementina
Ciclev10017764m.g
I
0.741
Solyc05g014290.2
Solanum lycopersicum
Solyc05g014290.2
I
0.738
PRUPE_ppa026877mg
Prunus persica
PRUPE_ppa026877mg
I
0.735
gene28021-v1.0-hybrid
Fragaria vesca
gene28021-v1.0-hybrid
I
0.735
POPTR_0001s36220
Populus trichocarpa
POPTR_0001s36220
I
0.729
GLYMA16G06900
Glycine max
GLYMA16G06900
I
0.728
Gorai.001G268000
Gossypium raimondii
Gorai.001G268000
I
0.728
Lus10014569.g
Linum usitatissimum
Lus10014569.g
I
0.725
mgf025004m
Mimulus guttatus
mgf025004m
I
0.722
MDP0000241111
Malus domestica
MDP0000241111
I
0.719
Pm015564
Prunus mume
Pm015564
I
0.719
MDP0000303239
Malus domestica
MDP0000303239
I
0.719
Gorai.007G074500
Gossypium raimondii
Gorai.007G074500
I
0.718
GLYMA19G07830
Glycine max
GLYMA19G07830
I
0.715
AMTR_s00049p00074250
Amborella trichopoda
AMTR_s00049p00074250
I
0.715
PGSC0003DMG400011976
Solanum tuberosum
PGSC0003DMG400011976
I
0.714
GLYMA05G06410
Glycine max
GLYMA05G06410
I
0.712
SapurV1A.0367s0020
Salix purpurea
SapurV1A.0367s0020
I
0.711
SapurV1A.0456s0310
Salix purpurea
SapurV1A.0456s0310
I
0.711
Aquca_011_00322
Aquilegia coerulea
Aquca_011_00322
I
0.705
GLYMA01G42050
Glycine max
GLYMA01G42050
I
0.694
POPTR_0015s14600
Populus trichocarpa
POPTR_0015s14600
I
0.694
Pavir.Ab02913
Panicum virgatum
Pavir.Ab02913
I
0.692
Gorai.008G238800
Gossypium raimondii
Gorai.008G238800
I
0.690
GSMUA_AchrUn_randomG11880_001
Musa acuminata
GSMUA_AchrUn_randomG11880_001
N
0.687
BGIOSGA005676
Oryza indica
BGIOSGA005676
I
0.685
OB02G38450
Oryza brachyantha
OB02G38450
I
0.685
Pavir.Aa00435
Panicum virgatum
Pavir.Aa00435
I
0.685
GRMZM2G055158
Zea mays
GRMZM2G055158
I
0.685
Si020225m.g
Setaria italica
Si020225m.g
I
0.685
ORUFI02G33090
Oryza rufipogon
ORUFI02G33090
I
0.685
OS02G0732600
Oryza sativa
OS02G0732600
I
0.685
Sb04g028850
Sorghum bicolor
Sb04g028850
I
0.685
ORGLA02G0269000
Oryza glaberrima
ORGLA02G0269000
I
0.685
OGLUM02G32070
Oryza glumaepatula
OGLUM02G32070
I
0.685
Aquca_013_00661
Aquilegia coerulea
Aquca_013_00661
I
0.683
SapurV1A.1318s0060
Salix purpurea
SapurV1A.1318s0060
I
0.683
SapurV1A.0102s0470
Salix purpurea
SapurV1A.0102s0470
I
0.683
SapurV1A.0045s0090
Salix purpurea
SapurV1A.0045s0090
I
0.681
cassava47045.m1
Manihot esculenta
cassava47045.m1
I
0.681
SapurV1A.0634s0020
Salix purpurea
SapurV1A.0634s0020
I
0.681
Gorai.003G168100
Gossypium raimondii
Gorai.003G168100
I
0.681
gene32268-v1.0-hybrid
Fragaria vesca
gene32268-v1.0-hybrid
I
0.681
Gorai.004G201900
Gossypium raimondii
Gorai.004G201900
I
0.681
Lus10027197.g
Linum usitatissimum
Lus10027197.g
I
0.681
Ciclev10021695m.g
Citrus clementina
Ciclev10021695m.g
I
0.681
Ciclev10005666m.g
Citrus clementina
Ciclev10005666m.g
I
0.681
Lus10038913.g
Linum usitatissimum
Lus10038913.g
I
0.681
evm.TU.supercontig_3.300
Carica papaya
evm.TU.supercontig_3.300
I
0.681
Eucgr.D02014
Eucalyptus grandis
Eucgr.D02014
I
0.681
orange1.1g024849m.g
Citrus sinensis
orange1.1g024849m.g
I
0.681
orange1.1g024441m.g
Citrus sinensis
orange1.1g024441m.g
I
0.681
cassava33331.m1
Manihot esculenta
cassava33331.m1
I
0.681
Cla011736
Citrullus lanatus
Cla011736
I
0.681
POPTR_0003s11360
Populus trichocarpa
POPTR_0003s11360
I
0.681
VIT_00s1241g00010
Vitis vinifera
VIT_00s1241g00010
I
0.681
VIT_16s0022g01210
Vitis vinifera
VIT_16s0022g01210
I
0.681
PRUPE_ppa021568mg
Prunus persica
PRUPE_ppa021568mg
I
0.681
BRADI4G29796
Brachypodium distachyon
BRADI4G29796
I
0.681
TCM_014956
Theobroma cacao
TCM_014956
I
0.681
TCM_016054
Theobroma cacao
TCM_016054
I
0.681
Solyc08g079270.2
Solanum lycopersicum
Solyc08g079270.2
I
0.681
POPTR_0001s07830
Populus trichocarpa
POPTR_0001s07830
I
0.681
30190.m011004
Ricinus communis
30190.m011004
I
0.681
cassava2058.valid.m1
Manihot esculenta
cassava2058.valid.m1
I
0.681
Pm023573
Prunus mume
Pm023573
I
0.681
GLYMA17G14291
Glycine max
GLYMA17G14291
I
0.681
PGSC0003DMG400004780
Solanum tuberosum
PGSC0003DMG400004780
I
0.681
Cla003626
Citrullus lanatus
Cla003626
I
0.681
GLYMA05G03780
Glycine max
GLYMA05G03780
I
0.681
Si030750m.g
Setaria italica
Si030750m.g
I
0.680
Pavir.Ba01239
Panicum virgatum
Pavir.Ba01239
I
0.680
Pavir.Bb02654
Panicum virgatum
Pavir.Bb02654
I
0.680
MTR_4g102380
Medicago truncatula
MTR_4g102380
I
0.677
PK08857.1
Cannabis sativa
PK08857.1
I
0.677
MDP0000682032
Malus domestica
MDP0000682032
I
0.677
Ca_08722
Cicer arietinum
Ca_08722
I
0.677
chr4.CM0126.370.nd
Lotus japonicus
chr4.CM0126.370.nd
I
0.677
Bo9g166000
Brassica oleracea
Bo9g166000
I
0.673
Bra008764
Brassica rapa
Bra008764
I
0.673
cassava21367.m1
Manihot esculenta
cassava21367.m1
I
0.670
Pm019472
Prunus mume
Pm019472
I
0.670
PRUPE_ppa011549mg
Prunus persica
PRUPE_ppa011549mg
I
0.670
Gorai.006G064000
Gossypium raimondii
Gorai.006G064000
I
0.669
Pavir.Da01229
Panicum virgatum
Pavir.Da01229
I
0.668
BRADI3G56917
Brachypodium distachyon
BRADI3G56917
I
0.668
TRIUR3_16495
Triticum urartu
TRIUR3_16495
I
0.668
MLOC_50944
Hordeum vulgare
MLOC_50944
I
0.668
F775_17058
Aegilops tauschii
F775_17058
I
0.668
GSMUA_Achr4G19880_001
Musa acuminata
GSMUA_Achr4G19880_001
I
0.668
OB08G22860
Oryza brachyantha
OB08G22860
I
0.667
Thhalv10014086m.g
Eutrema salsugineum
Thhalv10014086m.g
I
0.665
Bo2g013190
Brassica oleracea
Bo2g013190
I
0.665
GSMUA_Achr7G12520_001
Musa acuminata
GSMUA_Achr7G12520_001
I
0.665
Traes_5DL_46D39C394
Triticum aestivum
Traes_5DL_46D39C394
I
0.664
Lus10024589.g
Linum usitatissimum
Lus10024589.g
I
0.664
Bra006249
Brassica rapa
Bra006249
I
0.664
Bo3g009730
Brassica oleracea
Bo3g009730
I
0.664
Traes_5BL_D85C0EF26
Triticum aestivum
Traes_5BL_D85C0EF26
I
0.664
Cucsa.302180
Cucumis sativus
Cucsa.302180
I
0.664
GLYMA11G03300
Glycine max
GLYMA11G03300
I
0.664
mgf017719m
Mimulus guttatus
mgf017719m
I
0.664
MYB42
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_6002571
I
0.664
F775_13107
Aegilops tauschii
F775_13107
I
0.664
Lus10032226.g
Linum usitatissimum
Lus10032226.g
I
0.664
GSMUA_Achr7G05680_001
Musa acuminata
GSMUA_Achr7G05680_001
I
0.663
MYB99
Arabidopsis thaliana
AT5G62320
D
0.662
MYB99
Arabidopsis lyrata
scaffold_802887.1
I
0.662
Gorai.004G064100
Gossypium raimondii
Gorai.004G064100
I
0.662
BRADI3G36370
Brachypodium distachyon
BRADI3G36370
I
0.662
Bostr.0568s0574
Boechera stricta
Bostr.0568s0574
I
0.662
Sb02g024250
Sorghum bicolor
Sb02g024250
I
0.661