CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cucsa.156340
(
Cucumis sativus
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Cucsa.156340
T284442_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AtMYB40
M07126_2.00
Arabidopsis thaliana
YYYACCWAMYHHH
DDDRKTWGGTRRR
Dap-seq
OMalley et al.(2016)
MYB40_col_a
0.731
0.839
MYB43
M07127_2.00
Arabidopsis thaliana
NYYYACCWAMYWH
DWRKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB43_col_a
0.687
0.753
PK21166.1
M01281_2.00
Cannabis sativa
HACCWAMY
RKTWGGTD
PBM
Lambert et al.(2019)
pTH11255
0.663
0.753
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.156340.1
Myb
27
74
RGPWTVEEDHKLMNFILNNGIHCWRLVPKLAGLLRCGKSCRLRWINYL
Cucsa.156340.1
Myb
80
125
RGAFTEMEENQIIHLHSLLGNRWSKIAAHFPGRTDNEIKNHWNTRI
Links
Other
Myb/SANT
family TFs
Other
Cucumis sativus
TFs
221 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cla004104
Citrullus lanatus
Cla004104
I
0.909
Ciclev10017764m.g
Citrus clementina
Ciclev10017764m.g
I
0.876
PRUPE_ppa026877mg
Prunus persica
PRUPE_ppa026877mg
I
0.858
gene28021-v1.0-hybrid
Fragaria vesca
gene28021-v1.0-hybrid
I
0.858
Eucgr.J02279
Eucalyptus grandis
Eucgr.J02279
I
0.855
AtMYB40
Vitis vinifera
VIT_14s0219g00050
I
0.850
mgf018940m
Mimulus guttatus
mgf018940m
I
0.850
TCM_017051
Theobroma cacao
TCM_017051
I
0.849
Gorai.006G037500
Gossypium raimondii
Gorai.006G037500
I
0.849
Pm015564
Prunus mume
Pm015564
I
0.842
cassava17364.m1
Manihot esculenta
cassava17364.m1
I
0.842
Lus10032117.g
Linum usitatissimum
Lus10032117.g
I
0.839
MDP0000241111
Malus domestica
MDP0000241111
I
0.838
MDP0000303239
Malus domestica
MDP0000303239
I
0.838
Aquca_011_00323
Aquilegia coerulea
Aquca_011_00323
I
0.837
cassava3745.m1
Manihot esculenta
cassava3745.m1
I
0.836
evm.TU.supercontig_1097.3
Carica papaya
evm.TU.supercontig_1097.3
I
0.835
GLYMA16G06900
Glycine max
GLYMA16G06900
I
0.833
Eucgr.I01698
Eucalyptus grandis
Eucgr.I01698
I
0.830
29929.m004749
Ricinus communis
29929.m004749
I
0.826
PGSC0003DMG400012648
Solanum tuberosum
PGSC0003DMG400012648
I
0.823
Solyc02g093740.2
Solanum lycopersicum
Solyc02g093740.2
I
0.823
GLYMA19G07830
Glycine max
GLYMA19G07830
I
0.820
Ca_19393
Cicer arietinum
Ca_19393
I
0.817
POPTR_0001s36220
Populus trichocarpa
POPTR_0001s36220
I
0.815
Lus10014569.g
Linum usitatissimum
Lus10014569.g
I
0.814
Solyc05g014290.2
Solanum lycopersicum
Solyc05g014290.2
I
0.811
GLYMA05G06410
Glycine max
GLYMA05G06410
I
0.804
Gorai.001G268000
Gossypium raimondii
Gorai.001G268000
I
0.801
Gorai.007G074500
Gossypium raimondii
Gorai.007G074500
I
0.795
SapurV1A.0136s0070
Salix purpurea
SapurV1A.0136s0070
I
0.788
PGSC0003DMG400011976
Solanum tuberosum
PGSC0003DMG400011976
I
0.787
GSMUA_AchrUn_randomG11880_001
Musa acuminata
GSMUA_AchrUn_randomG11880_001
N
0.781
cassava15064.m1
Manihot esculenta
cassava15064.m1
I
0.779
GSMUA_Achr6G06800_001
Musa acuminata
GSMUA_Achr6G06800_001
I
0.778
SapurV1A.0206s0260
Salix purpurea
SapurV1A.0206s0260
I
0.777
Aquca_011_00322
Aquilegia coerulea
Aquca_011_00322
I
0.763
AtMYB40
Populus trichocarpa
POPTR_0008s18110
I
0.756
mgf025004m
Mimulus guttatus
mgf025004m
I
0.756
Bo3g009730
Brassica oleracea
Bo3g009730
I
0.751
Bra006249
Brassica rapa
Bra006249
I
0.751
Bra008764
Brassica rapa
Bra008764
I
0.751
AMTR_s00049p00074250
Amborella trichopoda
AMTR_s00049p00074250
I
0.747
Bo9g166000
Brassica oleracea
Bo9g166000
I
0.742
AtMYB40
Arabidopsis thaliana
AT5G14340
D
0.731
Bostr.2902s0170
Boechera stricta
Bostr.2902s0170
I
0.731
Cagra.3166s0041
Capsella grandiflora
Cagra.3166s0041
I
0.731
Thhalv10014425m.g
Eutrema salsugineum
Thhalv10014425m.g
I
0.731
Cagra.14303s0002
Capsella grandiflora
Cagra.14303s0002
I
0.729
Carubv10003172m.g
Capsella rubella
Carubv10003172m.g
I
0.729
Bostr.25463s0081
Boechera stricta
Bostr.25463s0081
I
0.712
PGSC0003DMG400015668
Solanum tuberosum
PGSC0003DMG400015668
I
0.710
Solyc04g014470.2
Solanum lycopersicum
Solyc04g014470.2
I
0.710
Solyc11g011050.1
Solanum lycopersicum
Solyc11g011050.1
I
0.710
Bo2g013190
Brassica oleracea
Bo2g013190
I
0.708
Thhalv10014086m.g
Eutrema salsugineum
Thhalv10014086m.g
I
0.704
estExt_gwp_gw1.C_780109
Physcomitrella patens
estExt_gwp_gw1.C_780109
N
0.703
Pavir.Ba02150
Panicum virgatum
Pavir.Ba02150
I
0.699
Pavir.Bb01873
Panicum virgatum
Pavir.Bb01873
I
0.699
Pavir.J21364
Panicum virgatum
Pavir.J21364
I
0.699
Bo4g101470
Brassica oleracea
Bo4g101470
I
0.698
fgenesh1_pg.scaffold_420000003
Physcomitrella patens
fgenesh1_pg.scaffold_420000003
I
0.696
MYB43
Arabidopsis thaliana
AT5G16600
D
0.687
Bo9g163020
Brassica oleracea
Bo9g163020
I
0.687
MYB43
Arabidopsis lyrata
scaffold_601700.1
I
0.687
Bostr.2902s0397
Boechera stricta
Bostr.2902s0397
I
0.687
Cagra.0434s0026
Capsella grandiflora
Cagra.0434s0026
I
0.687
Carubv10001378m.g
Capsella rubella
Carubv10001378m.g
I
0.687
Lus10004042.g
Linum usitatissimum
Lus10004042.g
I
0.685
MYB42
Arabidopsis thaliana
AT4G12350
I
0.682
MYB42
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_6002571
I
0.682
Si031939m.g
Setaria italica
Si031939m.g
I
0.682
Thhalv10028864m.g
Eutrema salsugineum
Thhalv10028864m.g
I
0.682
GLYMA02G41180
Glycine max
GLYMA02G41180
I
0.680
GLYMA11G33620
Glycine max
GLYMA11G33620
I
0.680
GLYMA14G39530
Glycine max
GLYMA14G39530
I
0.680
GLYMA18G04580
Glycine max
GLYMA18G04580
I
0.680
MTR_3g065440
Medicago truncatula
MTR_3g065440
I
0.680
MTR_5g078140
Medicago truncatula
MTR_5g078140
I
0.680
POPTR_0004s08480
Populus trichocarpa
POPTR_0004s08480
I
0.680
POPTR_0017s02850
Populus trichocarpa
POPTR_0017s02850
I
0.680
PRUPE_ppa009966mg
Prunus persica
PRUPE_ppa009966mg
I
0.680
TCM_019116
Theobroma cacao
TCM_019116
I
0.680
Ca_13286
Cicer arietinum
Ca_13286
I
0.680
Pm013020
Prunus mume
Pm013020
I
0.680
cassava6251.valid.m1
Manihot esculenta
cassava6251.valid.m1
I
0.680
Cucsa.006170
Cucumis sativus
Cucsa.006170
I
0.680
Ciclev10012265m.g
Citrus clementina
Ciclev10012265m.g
I
0.680
Eucgr.F02864
Eucalyptus grandis
Eucgr.F02864
I
0.680
Eucgr.J01601
Eucalyptus grandis
Eucgr.J01601
I
0.680
Gorai.001G205300
Gossypium raimondii
Gorai.001G205300
I
0.680
Gorai.004G064100
Gossypium raimondii
Gorai.004G064100
I
0.680
Gorai.008G060100
Gossypium raimondii
Gorai.008G060100
I
0.680
orange1.1g021498m.g
Citrus sinensis
orange1.1g021498m.g
I
0.680
SapurV1A.0102s0470
Salix purpurea
SapurV1A.0102s0470
I
0.680
SapurV1A.0390s0060
Salix purpurea
SapurV1A.0390s0060
I
0.680
SapurV1A.1318s0060
Salix purpurea
SapurV1A.1318s0060
I
0.680
cassava30009.valid.m1
Manihot esculenta
cassava30009.valid.m1
I
0.677
GSMUA_Achr9G15640_001
Musa acuminata
GSMUA_Achr9G15640_001
I
0.676
Si030711m.g
Setaria italica
Si030711m.g
I
0.673
Si032544m.g
Setaria italica
Si032544m.g
I
0.673
BGIOSGA029380
Oryza indica
BGIOSGA029380
I
0.672
OB09G24070
Oryza brachyantha
OB09G24070
I
0.672
OLONG_005336
Oryza longistaminata
OLONG_005336
I
0.672
ORGLA09G0137500
Oryza glaberrima
ORGLA09G0137500
I
0.672
OS09G0532900
Oryza sativa
OS09G0532900
I
0.672
MTR_7g111290
Medicago truncatula
MTR_7g111290
I
0.671
Sb02g024250
Sorghum bicolor
Sb02g024250
I
0.671
Cla009311
Citrullus lanatus
Cla009311
I
0.671
Aquca_013_00661
Aquilegia coerulea
Aquca_013_00661
I
0.671
Pavir.Ab02913
Panicum virgatum
Pavir.Ab02913
I
0.671
BGIOSGA030727
Oryza indica
BGIOSGA030727
I
0.669
BRADI4G29796
Brachypodium distachyon
BRADI4G29796
I
0.669
F775_19511
Aegilops tauschii
F775_19511
I
0.669
GLYMA05G03780
Glycine max
GLYMA05G03780
I
0.669
GLYMA17G14291
Glycine max
GLYMA17G14291
I
0.669
GRMZM2G037650
Zea mays
GRMZM2G037650
I
0.669
GRMZM2G104551
Zea mays
GRMZM2G104551
I
0.669
GRMZM2G138427
Zea mays
GRMZM2G138427
I
0.669
GRMZM2G169356
Zea mays
GRMZM2G169356
I
0.669
ORGLA09G0071400
Oryza glaberrima
ORGLA09G0071400
I
0.669
ORUFI09G10320
Oryza rufipogon
ORUFI09G10320
I
0.669
OS09G0401000
Oryza sativa
OS09G0401000
I
0.669
PGSC0003DMG400004780
Solanum tuberosum
PGSC0003DMG400004780
I
0.669
POPTR_0001s07830
Populus trichocarpa
POPTR_0001s07830
I
0.669
POPTR_0003s11360
Populus trichocarpa
POPTR_0003s11360
I
0.669
POPTR_0012s14540
Populus trichocarpa
POPTR_0012s14540
I
0.669
PRUPE_ppa021568mg
Prunus persica
PRUPE_ppa021568mg
I
0.669
Sb02g030900
Sorghum bicolor
Sb02g030900
I
0.669
Si030750m.g
Setaria italica
Si030750m.g
I
0.669
Solyc08g079270.2
Solanum lycopersicum
Solyc08g079270.2
I
0.669
TCM_014956
Theobroma cacao
TCM_014956
I
0.669
TCM_016054
Theobroma cacao
TCM_016054
I
0.669
Traes_5BL_30D8E6BE2
Triticum aestivum
Traes_5BL_30D8E6BE2
I
0.669
Traes_5DL_0B2C5ADF6
Triticum aestivum
Traes_5DL_0B2C5ADF6
I
0.669
VIT_00s1241g00010
Vitis vinifera
VIT_00s1241g00010
I
0.669
VIT_16s0022g01210
Vitis vinifera
VIT_16s0022g01210
I
0.669
Cla003626
Citrullus lanatus
Cla003626
I
0.669
Cla011736
Citrullus lanatus
Cla011736
I
0.669
Pm023573
Prunus mume
Pm023573
I
0.669
30190.m011004
Ricinus communis
30190.m011004
I
0.669
cassava2058.valid.m1
Manihot esculenta
cassava2058.valid.m1
I
0.669
cassava33331.m1
Manihot esculenta
cassava33331.m1
I
0.669
cassava47045.m1
Manihot esculenta
cassava47045.m1
I
0.669
Cucsa.115620
Cucumis sativus
Cucsa.115620
I
0.669
Ciclev10005666m.g
Citrus clementina
Ciclev10005666m.g
I
0.669
Ciclev10021695m.g
Citrus clementina
Ciclev10021695m.g
I
0.669
Eucgr.D02014
Eucalyptus grandis
Eucgr.D02014
I
0.669
Eucgr.K00153
Eucalyptus grandis
Eucgr.K00153
I
0.669
evm.TU.supercontig_3.300
Carica papaya
evm.TU.supercontig_3.300
I
0.669
gene21264-v1.0-hybrid
Fragaria vesca
gene21264-v1.0-hybrid
I
0.669
gene32268-v1.0-hybrid
Fragaria vesca
gene32268-v1.0-hybrid
I
0.669
Gorai.003G168100
Gossypium raimondii
Gorai.003G168100
I
0.669
Gorai.004G201900
Gossypium raimondii
Gorai.004G201900
I
0.669
Gorai.008G238800
Gossypium raimondii
Gorai.008G238800
I
0.669
Lus10027197.g
Linum usitatissimum
Lus10027197.g
I
0.669
Lus10038913.g
Linum usitatissimum
Lus10038913.g
I
0.669
orange1.1g024441m.g
Citrus sinensis
orange1.1g024441m.g
I
0.669
orange1.1g024849m.g
Citrus sinensis
orange1.1g024849m.g
I
0.669
Pavir.Ba01239
Panicum virgatum
Pavir.Ba01239
I
0.669
Pavir.Ba02148
Panicum virgatum
Pavir.Ba02148
I
0.669
Pavir.Ba02149
Panicum virgatum
Pavir.Ba02149
I
0.669
Pavir.Bb01872
Panicum virgatum
Pavir.Bb01872
I
0.669
Pavir.Bb02654
Panicum virgatum
Pavir.Bb02654
I
0.669
Pavir.Fb02321
Panicum virgatum
Pavir.Fb02321
I
0.669
Pavir.J36915
Panicum virgatum
Pavir.J36915
I
0.669
SapurV1A.0045s0090
Salix purpurea
SapurV1A.0045s0090
I
0.669
SapurV1A.0367s0020
Salix purpurea
SapurV1A.0367s0020
I
0.669
SapurV1A.0456s0310
Salix purpurea
SapurV1A.0456s0310
I
0.669
SapurV1A.0634s0020
Salix purpurea
SapurV1A.0634s0020
I
0.669
BGIOSGA026529
Oryza indica
BGIOSGA026529
I
0.666
Bo6g099800
Brassica oleracea
Bo6g099800
I
0.666
Bra004155
Brassica rapa
Bra004155
I
0.666
BRADI3G36370
Brachypodium distachyon
BRADI3G36370
I
0.666
BRADI3G42430
Brachypodium distachyon
BRADI3G42430
I
0.666
OB08G29480
Oryza brachyantha
OB08G29480
I
0.666
ORGLA08G0217800
Oryza glaberrima
ORGLA08G0217800
I
0.666
ORUFI08G25210
Oryza rufipogon
ORUFI08G25210
I
0.666
POPTR_0001s26590
Populus trichocarpa
POPTR_0001s26590
I
0.666
Bostr.26959s0295
Boechera stricta
Bostr.26959s0295
I
0.666
Cagra.1300s0004
Capsella grandiflora
Cagra.1300s0004
I
0.666
Carubv10020766m.g
Capsella rubella
Carubv10020766m.g
I
0.666
Lus10002296.g
Linum usitatissimum
Lus10002296.g
I
0.666
Lus10004043.g
Linum usitatissimum
Lus10004043.g
I
0.666
SapurV1A.0925s0070
Salix purpurea
SapurV1A.0925s0070
I
0.666
MTR_4g102380
Medicago truncatula
MTR_4g102380
I
0.665
Ca_08722
Cicer arietinum
Ca_08722
I
0.665
MDP0000682032
Malus domestica
MDP0000682032
I
0.665
PK08857.1
Cannabis sativa
PK08857.1
I
0.665
chr4.CM0126.370.nd
Lotus japonicus
chr4.CM0126.370.nd
I
0.665
BGIOSGA005676
Oryza indica
BGIOSGA005676
I
0.664
GRMZM2G055158
Zea mays
GRMZM2G055158
I
0.664
OB02G38450
Oryza brachyantha
OB02G38450
I
0.664
OGLUM02G32070
Oryza glumaepatula
OGLUM02G32070
I
0.664
ORGLA02G0269000
Oryza glaberrima
ORGLA02G0269000
I
0.664
ORUFI02G33090
Oryza rufipogon
ORUFI02G33090
I
0.664
OS02G0732600
Oryza sativa
OS02G0732600
I
0.664
Sb04g028850
Sorghum bicolor
Sb04g028850
I
0.664
Si020225m.g
Setaria italica
Si020225m.g
I
0.664
Pavir.Aa00435
Panicum virgatum
Pavir.Aa00435
I
0.664
GRMZM2G106558
Zea mays
GRMZM2G106558
I
0.663
GSMUA_Achr5G23110_001
Musa acuminata
GSMUA_Achr5G23110_001
I
0.663
GSMUA_Achr7G12520_001
Musa acuminata
GSMUA_Achr7G12520_001
I
0.663
MYB20
Arabidopsis lyrata
scaffold_201335.1
I
0.663
MYB43
Vitis vinifera
VIT_14s0006g00450
I
0.663
Cucsa.375180
Cucumis sativus
Cucsa.375180
I
0.663
gene30520-v1.0-hybrid
Fragaria vesca
gene30520-v1.0-hybrid
I
0.663
Pavir.Fb01563
Panicum virgatum
Pavir.Fb01563
I
0.663
Thhalv10019852m.g
Eutrema salsugineum
Thhalv10019852m.g
I
0.663
PK21166.1
Cannabis sativa
PK21166.1
D
0.663
LPERR08G19430
Leersia perrieri
LPERR08G19430
I
0.662
AMTR_s00091p00025820
Amborella trichopoda
AMTR_s00091p00025820
I
0.661
Bo3g165540
Brassica oleracea
Bo3g165540
I
0.661
Bra020016
Brassica rapa
Bra020016
I
0.661
GRMZM2G001223
Zea mays
GRMZM2G001223
I
0.661
GSMUA_Achr6G07260_001
Musa acuminata
GSMUA_Achr6G07260_001
I
0.661
GSMUA_Achr9G08600_001
Musa acuminata
GSMUA_Achr9G08600_001
I
0.661
Sb04g024000
Sorghum bicolor
Sb04g024000
I
0.661
Si017851m.g
Setaria italica
Si017851m.g
I
0.661
Eucgr.G01774
Eucalyptus grandis
Eucgr.G01774
I
0.661
Pavir.Ab02021
Panicum virgatum
Pavir.Ab02021
I
0.661