POPTR_0002s13030 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0002s13030 T278217_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS02G0187700
M02327_2.00 		Oryza sativa
NTAMCKGTHN
NDACMGKTAN		 PBM
Weirauch et al.(2014)
pTH8645 		0.722 0.774
MYB73
M07114_2.00 		Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB73_col_a 		0.682 0.763
PK28565.1
M02357_2.00 		Cannabis sativa
TAACBGTY
RACVGTTA		 PBM
Weirauch et al.(2014)
pTH9653 		0.678 0.763
AtMYB70
M01071_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH8588 		0.678 0.753
AtMYB70
M07048_2.00 		Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR		 Dap-seq
OMalley et al.(2016)
MYB70_col_a 		0.678 0.753
MYB44
M01082_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH7078 		0.676 0.753
MYB44
M07155_2.00 		Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD		 Dap-seq
OMalley et al.(2016)
MYB44_colamp_a 		0.676 0.753
MYB44
M07156_2.00 		Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD		 Dap-seq
OMalley et al.(2016)
MYB44_col 		0.676 0.753
F3A4.140
M02299_2.00 		Arabidopsis thaliana
YAACBGYY
RRCVGTTR		 PBM
Weirauch et al.(2014)
pTH7112 		0.668 0.763
F3A4.140
M07095_2.00 		Arabidopsis thaliana
TAACBGYHWHNNHNN
NNDNNDWDRCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB77_col_a 		0.668 0.763
F3A4.140
M07096_2.00 		Arabidopsis thaliana
AACCGYAACCSTAWHWWAMV
BKTWWDWTASGGTTRCGGTT		 Dap-seq
OMalley et al.(2016)
MYB77_colamp_a 		0.668 0.763
F3A4.140
M02701_2.00 		Arabidopsis thaliana
SYAACYGYCVHBN
NVDBGRCRGTTRS		 SELEX
Mathelier et al.(2014)
MA0575.1 		0.668 0.763
F3A4.140
M11044_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB77_01 		0.668 0.763
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s13030.1 Myb 37 83
POPTR_0002s13030.1 Myb 89 134

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

253 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000010559 Ailuropoda melanoleuca ENSAMEG00000010559 I
ENSAPLG00000008769 Anas platyrhynchos ENSAPLG00000008769 I
Afo_R003471 Aptenodytes forsteri Afo_R003471 I
BGLB005801 Biomphalaria glabrata BGLB005801 I
ENSCJAG00000001029 Callithrix jacchus ENSCJAG00000001029 I
Aan_R001040 Calypte anna Aan_R001040 I
ENSCAFG00000002448 Canis familiaris ENSCAFG00000002448 I
CapteG145851 Capitella teleta CapteG145851 I
ENSCPOG00000005481 Cavia porcellus ENSCPOG00000005481 I
ENSCSAG00000013508 Chlorocebus sabaeus ENSCSAG00000013508 I
CGI_10012885 Crassostrea gigas CGI_10012885 I
ENSDNOG00000003198 Dasypus novemcinctus ENSDNOG00000003198 I
Ahr Dipodomys ordii ENSDORG00000007750 I
ENSETEG00000019660 Echinops telfairi ENSETEG00000019660 I
ENSGALG00000010836 Gallus gallus ENSGALG00000010836 I
ahr1b Gasterosteus aculeatus ENSGACG00000015615 I
Gfo_R002789 Geospiza fortis Gfo_R002789 I
ENSGGOG00000011367 Gorilla gorilla ENSGGOG00000011367 I
AHR Homo sapiens ENSG00000106546 D
XP_002161735.1 Hydra magnipapillata XP_002161735.1 I
ENSSTOG00000003086 Ictidomys tridecemlineatus ENSSTOG00000003086 I
ENSLACG00000002803 Latimeria chalumnae ENSLACG00000002803 I
LotgiG117861 Lottia gigantea LotgiG117861 I
ENSLAFG00000015328 Loxodonta africana ENSLAFG00000015328 I
ENSP00000385642 Macaca fascicularis ENSP00000385642 I
ENSMMUG00000012203 Macaca mulatta ENSMMUG00000012203 I
ENSMGAG00000010174 Meleagris gallopavo ENSMGAG00000010174 I
ENSMODG00000001528 Monodelphis domestica ENSMODG00000001528 I
ENSMPUG00000013964 Mustela putorius furo ENSMPUG00000013964 I
Ahr Mus musculus ENSMUSG00000019256 D
Myotis_brandtii_AHR_10031750 Myotis brandtii Myotis_brandtii_AHR_10031750 I
ENSMLUG00000000097 Myotis lucifugus ENSMLUG00000000097 I
ENSOPRG00000010358 Ochotona princeps ENSOPRG00000010358 I
AHR Oryctolagus cuniculus ENSOCUG00000003877 I
ENSOGAG00000012656 Otolemur garnettii ENSOGAG00000012656 I
ENSOARG00000009234 Ovis aries ENSOARG00000009234 I
AHR Pan troglodytes ENSPTRG00000018955 I
ENSPANG00000002444 Papio anubis ENSPANG00000002444 I
ENSPSIG00000010051 Pelodiscus sinensis ENSPSIG00000010051 I
ENSPPYG00000017758 Pongo abelii ENSPPYG00000017758 I
ENSPCAG00000006894 Procavia capensis ENSPCAG00000006894 I
PXEA_0000742401 Protopolystoma xenopodis PXEA_0000742401 I
ENSPVAG00000002167 Pteropus vampyrus ENSPVAG00000002167 I
Ahr Rattus norvegicus ENSRNOG00000004342 I
ENSSHAG00000001563 Sarcophilus harrisii ENSSHAG00000001563 I
SMU15013078 Schmidtea mediterranea SMU15013078 I
SMU15033026 Schmidtea mediterranea SMU15033026 I
ENSSARG00000001961 Sorex araneus ENSSARG00000001961 I
SPU_005022 Strongylocentrotus purpuratus SPU_005022 I
AHR Sus scrofa ENSSSCG00000030484 I
ENSSSCG00000015364 Sus scrofa ENSSSCG00000015364 I
ENSTGUG00000002585 Taeniopygia guttata ENSTGUG00000002585 I
ENSTSYG00000010830 Tarsius syrichta ENSTSYG00000010830 I
ENSTBEG00000007210 Tupaia belangeri ENSTBEG00000007210 I
ENSTTRG00000006913 Tursiops truncatus ENSTTRG00000006913 I
Tal_R011867 Tyto alba Tal_R011867 I
ENSVPAG00000008443 Vicugna pacos ENSVPAG00000008443 I