CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

POPTR_0004s02570 *(Populus trichocarpa)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00249 (Myb_DNA-binding)	IPR014778	POPTR_0004s02570	T278256_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
AtMYB74 M07104_2.00	Arabidopsis thaliana	NYYYACCTAMYWHH	DDWRKTAGGTRRRN	Dap-seq OMalley et al.(2016) MYB74_colamp_a	0.699	0.720
AtMYB74 M07105_2.00	Arabidopsis thaliana	BYHYACCTAMYHHH	DDDRKTAGGTRDRV	Dap-seq OMalley et al.(2016) MYB74_col	0.699	0.720
PK28187.1 M01286_2.00	Cannabis sativa	TACCTACC	GGTAGGTA	PBM Lambert et al.(2019) pTH11305	0.696	0.710
MYB15 M07084_2.00	Arabidopsis thaliana	NNNHNNHHNHHYCACCWAMYH	DRKTWGGTGRDDNDDNNDNNN	Dap-seq OMalley et al.(2016) ATY19_col_a	0.675	0.720
MYB15 M02699_2.00	Arabidopsis thaliana	CCACCTACCSBBG	CVVSGGTAGGTGG	SELEX Mathelier et al.(2014) MA0574.1	0.675	0.720
MYB15 M11041_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ATMYB15_01	0.675	0.720
MYB15 M11042_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ATMYB15_Q2	0.675	0.720
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
POPTR_0004s02570.1	Myb	25	72	RGAWSPEEDQKLIAYINSHGIRNWIEMPKAAGLLRSGKSCRLRWMNYL
POPTR_0004s02570.1	Myb	78	123	RGNFSMEEVETILKLHGILGNRWSAIAAKLPGRTDNEIKNFWNTRL

Links
Other Myb/SANT family TFs
Other *Populus trichocarpa* TFs