CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

POPTR_0006s08570 *(Populus trichocarpa)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00249 (Myb_DNA-binding)	IPR014778	POPTR_0006s08570	T278295_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
MYB3R5 M07116_2.00	Arabidopsis thaliana	NWWWWNTDRCCGTTR	YAACGGYHANWWWWN	Dap-seq OMalley et al.(2016) MYB3R5_col_a	0.777	0.900
PK12011.1 M01279_2.00	Cannabis sativa	HAACGGHHNN	NNDDCCGTTD	PBM Lambert et al.(2019) pTH11423	0.700	0.793
PC-MYB1 M07110_2.00	Arabidopsis thaliana	NDWWNTDRCCGTTRN	NYAACGGYHANWWHN	Dap-seq OMalley et al.(2016) MYB3R1_col_a	0.693	0.743
PC-MYB1 M07111_2.00	Arabidopsis thaliana	DWHNTDRCCGTTR	YAACGGYHANDWH	Dap-seq OMalley et al.(2016) MYB3R1_colamp_a	0.693	0.743
Q948S5_TOBAC M11074_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MYBA2_01	0.677	0.771
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
POPTR_0006s08570.1	Myb	79	125	KGGWTPEEDETLRTAVATYKGKSWKKIAEFFPDRSEVQCLHRWQKVL
POPTR_0006s08570.1	Myb	131	177	KGPWTQEEDDKIVELVAKYGPTKWSVIAKALPGRIGKQCRERWHNHL
POPTR_0006s08570.1	Myb	183	228	KDAWTLEEELALMNAHRIYGNKWAEIAKVLPGRTDNSIKNHWNSSL

Links
Other Myb/SANT family TFs
Other *Populus trichocarpa* TFs