CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

POPTR_0009s04730 *(Populus trichocarpa)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00249 (Myb_DNA-binding)	IPR014778	POPTR_0009s04730	T278368_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PK27213.1 M01284_2.00	Cannabis sativa	NHWATCNNNN	NNNNGATWDN	PBM Lambert et al.(2019) pTH10196	0.827	0.904
PK27213.1 M02356_2.00	Cannabis sativa	NHHATCNNNN	NNNNGATDDN	PBM Weirauch et al.(2014) pTH9600	0.827	0.904
AT2G38090 M07055_2.00	Arabidopsis thaliana	HHBAWNYTTATCYWNWHYNBN	NVNRDWNWRGATAARNWTVDD	Dap-seq OMalley et al.(2016) At2g38090_col_a	0.732	0.840
PK27693.1 M01285_2.00	Cannabis sativa	NNYTATCBNN	NNVGATARNN	PBM Lambert et al.(2019) pTH11302	0.716	0.830
AT5G58900 M07146_2.00	Arabidopsis thaliana	HHWWYCTTATCYWHW	WDWRGATAAGRWWDD	Dap-seq OMalley et al.(2016) At5g58900_col_a	0.706	0.851
AT5G58900 M07147_2.00	Arabidopsis thaliana	HWYMTTATCHWNWWH	DWWNWDGATAAKRWD	Dap-seq OMalley et al.(2016) At5g58900_colamp_a	0.706	0.851
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
POPTR_0009s04730.1	Myb	135	182	GVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVISRTPTQVASHAQKYF

Links
Other Myb/SANT family TFs
Other *Populus trichocarpa* TFs