Solyc10g083340.1 (Solanum lycopersicum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Solyc10g083340.1 T280260_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYR2
M02294_2.00 		Arabidopsis thaliana
NKATDCBNN
NNVGHATMN		 PBM
Weirauch et al.(2014)
pTH7097 		0.881 0.894
MYR2
M07063_2.00 		Arabidopsis thaliana
NNDAAKATTCYHHN
NDDRGAATMTTHNN		 Dap-seq
OMalley et al.(2016)
At3g04030_col_a 		0.881 0.894
MYR2
M07064_2.00 		Arabidopsis thaliana
VRAAKATTCBHWNNN
NNNWDVGAATMTTYB		 Dap-seq
OMalley et al.(2016)
At3g04030_colamp_a 		0.881 0.894
MYR1
M02309_2.00 		Arabidopsis thaliana
NKATNCBNNN
NNNVGNATMN		 PBM
Weirauch et al.(2014)
pTH8859 		0.860 0.851
AT3G24120
M00729_2.00 		Arabidopsis thaliana
NNKATDCBNN
NNVGHATMNN		 PBM
Chang et al.(2013)
pTH7086 		0.779 0.745
UNE16
M01270_2.00 		Arabidopsis thaliana
NWKATTCBNN
NNVGAATMWN		 PBM
Lambert et al.(2019)
pTH9967 		0.779 0.745
AT3G24120
M07085_2.00 		Arabidopsis thaliana
HAKATTCB
VGAATMTD		 Dap-seq
OMalley et al.(2016)
At3g24120_col_a 		0.779 0.745
AT3G24120
M07086_2.00 		Arabidopsis thaliana
NDRAAKATTCBHHN
NDDVGAATMTTYHN		 Dap-seq
OMalley et al.(2016)
At3g24120_colamp_a 		0.779 0.745
PHL11
M07134_2.00 		Arabidopsis thaliana
NNRAAKATTCYHHN
NDDRGAATMTTYNN		 Dap-seq
OMalley et al.(2016)
AT5G45580_col_a 		0.760 0.851
PHL11
M07135_2.00 		Arabidopsis thaliana
NRAAKATTCYHHNN
NNDDRGAATMTTYN		 Dap-seq
OMalley et al.(2016)
AT5G45580_colamp_a 		0.760 0.851
PHL7
M02292_2.00 		Arabidopsis thaliana
NWGATDCBNN
NNVGHATCWN		 PBM
Weirauch et al.(2014)
pTH7253 		0.729 0.745
PK10342.1
M02351_2.00 		Cannabis sativa
WAGATKCS
SGMATCTW		 PBM
Weirauch et al.(2014)
pTH9489 		0.729 0.745
PHL7
M07040_2.00 		Arabidopsis thaliana
DRNAKATTCBNHNNN
NNNDNVGAATMTNYH		 Dap-seq
OMalley et al.(2016)
At2g01060_colamp_a 		0.729 0.745
PHL7
M07041_2.00 		Arabidopsis thaliana
VGAATATTCBNHH
DDNVGAATATTCB		 Dap-seq
OMalley et al.(2016)
At2g01060_col 		0.729 0.745
PHL12
M01077_2.00 		Arabidopsis thaliana
NWKATTCBNN
NNVGAATMWN		 PBM
Sullivan et al.(2014)
pTH7098 		0.719 0.723
PHL12
M07079_2.00 		Arabidopsis thaliana
RGAATATTCYYTWN
NWARRGAATATTCY		 Dap-seq
OMalley et al.(2016)
At3g12730_col_a 		0.719 0.723
PHL12
M07080_2.00 		Arabidopsis thaliana
NNRAAKATTCBHHN
NDDVGAATMTTYNN		 Dap-seq
OMalley et al.(2016)
At3g12730_colamp_a 		0.719 0.723
PHL1
M02310_2.00 		Arabidopsis thaliana
NWKATNCBNN
NNVGNATMWN		 PBM
Weirauch et al.(2014)
pTH7122 		0.691 0.745
PHL1
M07132_2.00 		Arabidopsis thaliana
MDRGAATATTCBNWN
NWNVGAATATTCYHK		 Dap-seq
OMalley et al.(2016)
At5g29000_col_a 		0.691 0.745
Q5IWM2_WHEAT
M11059_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYB80_01 		0.665 0.702
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc10g083340.1.1 Myb 46 97

Links

Other Myb/SANT family TFs
Other Solanum lycopersicum TFs

828 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000007657 Ailuropoda melanoleuca ENSAMEG00000007657 I
AMTR_s00010p00098700 Amborella trichopoda AMTR_s00010p00098700 I
Aquca_015_00069 Aquilegia coerulea Aquca_015_00069 I
ATERF14 Arabidopsis lyrata scaffold_100393.1 I
ERF14 Arabidopsis thaliana AT1G04370 D
ENSAMXG00000024869 Astyanax mexicanus ENSAMXG00000024869 I
Bostr.26675s0318 Boechera stricta Bostr.26675s0318 I
HIC1 Bos taurus ENSBTAG00000025130 I
Bo5g004520 Brassica oleracea Bo5g004520 I
Bra008835 Brassica rapa Bra008835 I
Bra015310 Brassica rapa Bra015310 I
Bra040159 Brassica rapa Bra040159 I
HIC1 Canis familiaris ENSCAFG00000019257 I
PK23186.1 Cannabis sativa PK23186.1 I
Cagra.1671s0052 Capsella grandiflora Cagra.1671s0052 I
Carubv10011057m.g Capsella rubella Carubv10011057m.g I
estExt_fgeneshCV_pg.C_120242 Chlorella vulgaris estExt_fgeneshCV_pg.C_120242 I
ENSCSAG00000013805 Chlorocebus sabaeus ENSCSAG00000013805 I
Ca_09638 Cicer arietinum Ca_09638 I
estExt_Genemark1.C_100079 Coccomyxa subellipsoidea C169 estExt_Genemark1.C_100079 I
hic1 Danio rerio ENSDARG00000055493 I
HIC1 Dasypus novemcinctus ENSDNOG00000049226 I
ENSDORG00000016613 Dipodomys ordii ENSDORG00000016613 I
Thhalv10009418m.g Eutrema salsugineum Thhalv10009418m.g I
Thhalv10022200m.g Eutrema salsugineum Thhalv10022200m.g I
Thhalv10027401m.g Eutrema salsugineum Thhalv10027401m.g I
gene04916-v1.0-hybrid Fragaria vesca gene04916-v1.0-hybrid I
gene24044-v1.0-hybrid Fragaria vesca gene24044-v1.0-hybrid I
ENSGMOG00000011705 Gadus morhua ENSGMOG00000011705 I
GLYMA03G26310 Glycine max GLYMA03G26310 I
GLYMA03G41640 Glycine max GLYMA03G41640 I
HIC1 Gorilla gorilla ENSGGOG00000027584 I
Gorai.001G252400 Gossypium raimondii Gorai.001G252400 I
Gorai.007G105600 Gossypium raimondii Gorai.007G105600 I
Gorai.007G105700 Gossypium raimondii Gorai.007G105700 I
Gorai.013G169500 Gossypium raimondii Gorai.013G169500 I
HIC1 Homo sapiens ENSG00000177374 D
MLOC_67996 Hordeum vulgare MLOC_67996 I
ENSSTOG00000011792 Ictidomys tridecemlineatus ENSSTOG00000011792 I
LPERR02G27530 Leersia perrieri LPERR02G27530 I
LPERR04G09480 Leersia perrieri LPERR04G09480 I
LPERR10G14500 Leersia perrieri LPERR10G14500 I
ENSLOCG00000006478 Lepisosteus oculatus ENSLOCG00000006478 I
Lus10013959.g Linum usitatissimum Lus10013959.g I
HIC1 Loxodonta africana ENSLAFG00000001259 I
ENSMMUG00000030393 Macaca mulatta ENSMMUG00000030393 I
MDP0000180950 Malus domestica MDP0000180950 I
MDP0000279943 Malus domestica MDP0000279943 I
MDP0000312701 Malus domestica MDP0000312701 I
cassava4507.m1 Manihot esculenta cassava4507.m1 I
MTR_4g086160 Medicago truncatula MTR_4g086160 I
MTR_4g086165 Medicago truncatula MTR_4g086165 I
MTR_4g086190 Medicago truncatula MTR_4g086190 I
MTR_8g092460 Medicago truncatula MTR_8g092460 I
HIC1 Microcebus murinus ENSMICG00000012908 I
mgf022434m Mimulus guttatus mgf022434m I
HIC2 Monodelphis domestica ENSMODG00000017662 I
GSMUA_Achr3G06960_001 Musa acuminata GSMUA_Achr3G06960_001 I
GSMUA_Achr8G08000_001 Musa acuminata GSMUA_Achr8G08000_001 I
ENSMPUG00000019502 Mustela putorius furo ENSMPUG00000019502 I
Myotis_brandtii_HIC1_10015709 Myotis brandtii Myotis_brandtii_HIC1_10015709 I
HIC1 Myotis lucifugus ENSMLUG00000010527 I
ENSNLEG00000000203 Nomascus leucogenys ENSNLEG00000000203 I
ENSONIG00000021060 Oreochromis niloticus ENSONIG00000021060 I
OBART02G19930 Oryza barthii OBART02G19930 I
OBART02G33690 Oryza barthii OBART02G33690 I
OB09G19290 Oryza brachyantha OB09G19290 I
ORGLA02G0170800 Oryza glaberrima ORGLA02G0170800 I
ORGLA02G0291300 Oryza glaberrima ORGLA02G0291300 I
OGLUM02G34120 Oryza glumaepatula OGLUM02G34120 I
BGIOSGA005557 Oryza indica BGIOSGA005557 I
OMERI09G10200 Oryza meridionalis OMERI09G10200 I
ONIVA02G33420 Oryza nivara ONIVA02G33420 I
OPUNC02G17880 Oryza punctata OPUNC02G17880 I
OPUNC09G11150 Oryza punctata OPUNC09G11150 I
ORUFI02G21030 Oryza rufipogon ORUFI02G21030 I
OS02G0546600 Oryza sativa OS02G0546600 I
HIC1 Otolemur garnettii ENSOGAG00000034845 I
Pavir.Ib00526 Panicum virgatum Pavir.Ib00526 I
Pavir.J15316 Panicum virgatum Pavir.J15316 I
Pavir.J26885 Panicum virgatum Pavir.J26885 I
Pavir.J32835 Panicum virgatum Pavir.J32835 I
Pavir.J34139 Panicum virgatum Pavir.J34139 I
ENSPTRG00000008543 Pan troglodytes ENSPTRG00000008543 I
ENSPANG00000024595 Papio anubis ENSPANG00000024595 I
e_gw1.5.258.1 Physcomitrella patens e_gw1.5.258.1 I
e_gw1.74.130.1 Physcomitrella patens e_gw1.74.130.1 I
ENSPFOG00000004471 Poecilia formosa ENSPFOG00000004471 I
ENSPPYG00000007789 Pongo abelii ENSPPYG00000007789 I
HIC1 Procavia capensis ENSPCAG00000000535 I
HIC1 Pteropus vampyrus ENSPVAG00000002158 I
Hic1 Rattus norvegicus ENSRNOG00000046405 I
LOC100912068 Rattus norvegicus ENSRNOG00000057619 I
SapurV1A.0007s0970 Salix purpurea SapurV1A.0007s0970 I
SapurV1A.0711s0020 Salix purpurea SapurV1A.0711s0020 I
Si010967m.g Setaria italica Si010967m.g I
Si019157m.g Setaria italica Si019157m.g I
Si036615m.g Setaria italica Si036615m.g I
PGSC0003DMG400016003 Solanum tuberosum PGSC0003DMG400016003 I
HIC1 Sorex araneus ENSSARG00000010162 I
HIC1 Sus scrofa ENSSSCG00000025717 I
TCM_005203 Theobroma cacao TCM_005203 I
VIT_15s0021g01590 Vitis vinifera VIT_15s0021g01590 I
VIT_15s0021g01600 Vitis vinifera VIT_15s0021g01600 I
VIT_15s0021g01610 Vitis vinifera VIT_15s0021g01610 I
ENSXMAG00000001419 Xiphophorus maculatus ENSXMAG00000001419 I
GRMZM2G018984 Zea mays GRMZM2G018984 I
GRMZM2G020016 Zea mays GRMZM2G020016 I
GRMZM2G138396 Zea mays GRMZM2G138396 I
GRMZM2G175525 Zea mays GRMZM2G175525 I