Ca_18030 (Cicer arietinum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Ca_18030 T283072_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.852 0.870
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.824 0.826
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.824 0.826
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.824 0.826
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.770 0.804
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.770 0.804
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.770 0.804
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.770 0.804
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.770 0.804
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.742 0.761
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.742 0.761
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.732 0.761
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.724 0.630
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.724 0.630
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.724 0.630
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.701 0.630
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.693 0.717
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.693 0.717
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ca_18030 Myb 65 110

Links

Other Myb/SANT family TFs
Other Cicer arietinum TFs

303 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
scaffold_100594.1 Arabidopsis lyrata scaffold_100594.1 I
AT1G06070 Arabidopsis thaliana AT1G06070 D
Bostr.25219s0353 Boechera stricta Bostr.25219s0353 I
Bo5g007170 Brassica oleracea Bo5g007170 I
Bo8g005940 Brassica oleracea Bo8g005940 I
Bra015471 Brassica rapa Bra015471 I
Bra030637 Brassica rapa Bra030637 I
PK20942.1 Cannabis sativa PK20942.1 D
Cagra.1671s0236 Capsella grandiflora Cagra.1671s0236 I
Carubv10008993m.g Capsella rubella Carubv10008993m.g I
Ca_02692 Cicer arietinum Ca_02692 I
Cla022204 Citrullus lanatus Cla022204 I
Cla022201 Citrullus lanatus Cla022201 I
Cucsa.251880 Cucumis sativus Cucsa.251880 I
Cucsa.062530 Cucumis sativus Cucsa.062530 I
Eucgr.D00737 Eucalyptus grandis Eucgr.D00737 I
Thhalv10007692m.g Eutrema salsugineum Thhalv10007692m.g I
gene23487-v1.0-hybrid Fragaria vesca gene23487-v1.0-hybrid I
GLYMA15G03350 Glycine max GLYMA15G03350 I
GLYMA13G42030 Glycine max GLYMA13G42030 I
GLYMA12G05520 Glycine max GLYMA12G05520 I
GLYMA11G13510 Glycine max GLYMA11G13510 I
Gorai.005G015900 Gossypium raimondii Gorai.005G015900 I
Gorai.006G229500 Gossypium raimondii Gorai.006G229500 I
Gorai.011G140400 Gossypium raimondii Gorai.011G140400 I
MLOC_64781 Hordeum vulgare MLOC_64781 I
Lus10008150.g Linum usitatissimum Lus10008150.g I
Lus10019376.g Linum usitatissimum Lus10019376.g I
chr3.CM0106.340.nd Lotus japonicus chr3.CM0106.340.nd I
MDP0000234166 Malus domestica MDP0000234166 I
MDP0000435971 Malus domestica MDP0000435971 I
cassava43164.valid.m1 Manihot esculenta cassava43164.valid.m1 I
cassava32399.m1 Manihot esculenta cassava32399.m1 I
OB09G23080 Oryza brachyantha OB09G23080 I
OGLUM09G17020 Oryza glumaepatula OGLUM09G17020 I
OMERI09G12160 Oryza meridionalis OMERI09G12160 I
RF2A Oryza sativa OS09G0516200 I
POPTR_0017s05610 Populus trichocarpa POPTR_0017s05610 I
Solyc06g053350.2 Solanum lycopersicum Solyc06g053350.2 I
TCM_019998 Theobroma cacao TCM_019998 I
Traes_7DS_47B5A7FFF Triticum aestivum Traes_7DS_47B5A7FFF I
TRIUR3_16287 Triticum urartu TRIUR3_16287 I
VIT_05s0102g01120 Vitis vinifera VIT_05s0102g01120 I