Ca_27606 (Cicer arietinum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Ca_27606 T283124_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB106
M11040_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G01140_01 		0.866 0.903
MYB107
M07061_2.00 		Arabidopsis thaliana
NDDWDBBYYACCWAMYHH
DDRKTWGGTRRVVHWHHN		 Dap-seq
OMalley et al.(2016)
MYB107_col_a 		0.770 0.785
MYB107
M07062_2.00 		Arabidopsis thaliana
WNBYYYACCWAMYH
DRKTWGGTRRRVNW		 Dap-seq
OMalley et al.(2016)
MYB107_colamp_a 		0.770 0.785
MYB92
M07123_2.00 		Arabidopsis thaliana
NHHACCTAMY
RKTAGGTDDN		 Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b 		0.745 0.742
MYB92
M07124_2.00 		Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH
DDRKTWGGTRRRNNWNNNN		 Dap-seq
OMalley et al.(2016)
MYB92_colamp_a 		0.745 0.742
AtMYB93
M07020_2.00 		Arabidopsis thaliana
HDNYYYAMCWAMYHHHHHHHH
DDDDDDDDRKTWGKTRRRNHD		 Dap-seq
OMalley et al.(2016)
MYB93_col_a 		0.742 0.785
AtMYB93
M07021_2.00 		Arabidopsis thaliana
NNHNBYYYAMCWAMY
RKTWGKTRRRVNDNN		 Dap-seq
OMalley et al.(2016)
MYB93_colamp_a 		0.742 0.785
MYB39
M07106_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_col_a 		0.709 0.753
MYB39
M07107_2.00 		Arabidopsis thaliana
NYYYACCWAMYWHHHHHHHNH
DNDDDDDDDWRKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_colamp_a 		0.709 0.753
MYB49
M07140_2.00 		Arabidopsis thaliana
HDBBYYACCWAMYWH
DWRKTWGGTRRVVHD		 Dap-seq
OMalley et al.(2016)
MYB49_col_a 		0.695 0.785
MYB49
M07141_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHN
NDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB49_colamp_a 		0.695 0.785
AtMYB17
M07099_2.00 		Arabidopsis thaliana
YYYACCWACCWHHHH
DDDDWGGTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB17_colamp_a 		0.688 0.763
ATMYB13
M06999_2.00 		Arabidopsis thaliana
HYCACCWACCHHHNH
DNDDDGGTWGGTGRD		 Dap-seq
OMalley et al.(2016)
MYB13_col_a 		0.673 0.731
ATMYB13
M07000_2.00 		Arabidopsis thaliana
BYCACCWACCHHHNNHNN
NNDNNDDDGGTWGGTGRV		 Dap-seq
OMalley et al.(2016)
MYB13_colamp_a 		0.673 0.731
AtMYB74
M07104_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB74_colamp_a 		0.669 0.785
AtMYB74
M07105_2.00 		Arabidopsis thaliana
BYHYACCTAMYHHH
DDDRKTAGGTRDRV		 Dap-seq
OMalley et al.(2016)
MYB74_col 		0.669 0.785
PK28187.1
M01286_2.00 		Cannabis sativa
TACCTACC
GGTAGGTA		 PBM
Lambert et al.(2019)
pTH11305 		0.666 0.785
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ca_27606 Myb 14 61
Ca_27606 Myb 67 112

Links

Other Myb/SANT family TFs
Other Cicer arietinum TFs

683 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00016p00207780 Amborella trichopoda AMTR_s00016p00207780 N
Aquca_021_00065 Aquilegia coerulea Aquca_021_00065 N
Aquca_011_00061 Aquilegia coerulea Aquca_011_00061 N
BRADI4G18390 Brachypodium distachyon BRADI4G18390 N
PK25517.1 Cannabis sativa PK25517.1 N
PK23183.1 Cannabis sativa PK23183.1 N
evm.TU.supercontig_70.116 Carica papaya evm.TU.supercontig_70.116 N
Cla012038 Citrullus lanatus Cla012038 N
Ciclev10018153m.g Citrus clementina Ciclev10018153m.g N
orange1.1g045762m.g Citrus sinensis orange1.1g045762m.g N
Cucsa.087900 Cucumis sativus Cucsa.087900 N
Eucgr.I01625 Eucalyptus grandis Eucgr.I01625 N
Eucgr.H03356 Eucalyptus grandis Eucgr.H03356 N
gene01356-v1.0-hybrid Fragaria vesca gene01356-v1.0-hybrid N
GLYMA16G05751 Glycine max GLYMA16G05751 N
GLYMA19G26735 Glycine max GLYMA19G26735 N
Gorai.006G044300 Gossypium raimondii Gorai.006G044300 N
LPERR11G11520 Leersia perrieri LPERR11G11520 N
Lus10012554.g Linum usitatissimum Lus10012554.g N
cassava38785.m1 Manihot esculenta cassava38785.m1 N
MTR_7g027190 Medicago truncatula MTR_7g027190 N
mgf025393m Mimulus guttatus mgf025393m N
GSMUA_Achr6G20830_001 Musa acuminata GSMUA_Achr6G20830_001 N
OBART11G14550 Oryza barthii OBART11G14550 N
ORGLA11G0124900 Oryza glaberrima ORGLA11G0124900 N
OGLUM11G14080 Oryza glumaepatula OGLUM11G14080 N
ONIVA11G13990 Oryza nivara ONIVA11G13990 N
OPUNC11G12230 Oryza punctata OPUNC11G12230 N
Pavir.J25769 Panicum virgatum Pavir.J25769 N
POPTR_0001s33360 Populus trichocarpa POPTR_0001s33360 N
Pm016121 Prunus mume Pm016121 N
PRUPE_ppa024399mg Prunus persica PRUPE_ppa024399mg N
30131.m007029 Ricinus communis 30131.m007029 N
SapurV1A.2454s0030 Salix purpurea SapurV1A.2454s0030 N
Si027708m.g Setaria italica Si027708m.g N
Solyc02g094340.1 Solanum lycopersicum Solyc02g094340.1 N
PGSC0003DMG400020243 Solanum tuberosum PGSC0003DMG400020243 N
Sb05g018070 Sorghum bicolor Sb05g018070 N
TCM_017269 Theobroma cacao TCM_017269 N
VIT_14s0068g01610 Vitis vinifera VIT_14s0068g01610 N
GRMZM2G342217 Zea mays GRMZM2G342217 N