Pm024886 (Prunus mume)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pm024886 T283607_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB106
M11040_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G01140_01 		0.773 0.828
MYB107
M07061_2.00 		Arabidopsis thaliana
NDDWDBBYYACCWAMYHH
DDRKTWGGTRRVVHWHHN		 Dap-seq
OMalley et al.(2016)
MYB107_col_a 		0.753 0.742
MYB107
M07062_2.00 		Arabidopsis thaliana
WNBYYYACCWAMYH
DRKTWGGTRRRVNW		 Dap-seq
OMalley et al.(2016)
MYB107_colamp_a 		0.753 0.742
ATMYB13
M06999_2.00 		Arabidopsis thaliana
HYCACCWACCHHHNH
DNDDDGGTWGGTGRD		 Dap-seq
OMalley et al.(2016)
MYB13_col_a 		0.686 0.720
ATMYB13
M07000_2.00 		Arabidopsis thaliana
BYCACCWACCHHHNNHNN
NNDNNDDDGGTWGGTGRV		 Dap-seq
OMalley et al.(2016)
MYB13_colamp_a 		0.686 0.720
MYB92
M07123_2.00 		Arabidopsis thaliana
NHHACCTAMY
RKTAGGTDDN		 Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b 		0.686 0.688
MYB92
M07124_2.00 		Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH
DDRKTWGGTRRRNNWNNNN		 Dap-seq
OMalley et al.(2016)
MYB92_colamp_a 		0.686 0.688
AtMYB93
M07020_2.00 		Arabidopsis thaliana
HDNYYYAMCWAMYHHHHHHHH
DDDDDDDDRKTWGKTRRRNHD		 Dap-seq
OMalley et al.(2016)
MYB93_col_a 		0.674 0.720
AtMYB93
M07021_2.00 		Arabidopsis thaliana
NNHNBYYYAMCWAMY
RKTWGKTRRRVNDNN		 Dap-seq
OMalley et al.(2016)
MYB93_colamp_a 		0.674 0.720
MYB58
M07005_2.00 		Arabidopsis thaliana
NNYYYACCWAMCHHH
DDDGKTWGGTRRRNN		 Dap-seq
OMalley et al.(2016)
MYB58_col_a 		0.662 0.667
MYB58
M07006_2.00 		Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH
DNNNNDDDGKTWGGTRDRNND		 Dap-seq
OMalley et al.(2016)
MYB58_colamp_a 		0.662 0.667
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm024886 Myb 15 62
Pm024886 Myb 68 113

Links

Other Myb/SANT family TFs
Other Prunus mume TFs

493 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.5789s0001 Capsella grandiflora Cagra.5789s0001 N
Cagra.0876s0043 Capsella grandiflora Cagra.0876s0043 N
MLOC_39554 Hordeum vulgare MLOC_39554 I 0.677
LjSGA_057038.1 Lotus japonicus LjSGA_057038.1 N
LjSGA_034303.1 Lotus japonicus LjSGA_034303.1 N
LjSGA_014958.1 Lotus japonicus LjSGA_014958.1 N
CM0385.220.nd Lotus japonicus CM0385.220.nd N
chr5.CM0071.390.nd Lotus japonicus chr5.CM0071.390.nd N
chr1.CM0600.120.nd Lotus japonicus chr1.CM0600.120.nd N
cassava15703.m1 Manihot esculenta cassava15703.m1 N
cassava45648.m1 Manihot esculenta cassava45648.m1 N
MTR_1g087540 Medicago truncatula MTR_1g087540 N
mgf023771m Mimulus guttatus mgf023771m N
ORGLA02G0219000 Oryza glaberrima ORGLA02G0219000 N
Pavir.Db00878 Panicum virgatum Pavir.Db00878 N
Pavir.Eb02286 Panicum virgatum Pavir.Eb02286 N
Pavir.J14839 Panicum virgatum Pavir.J14839 N
PDK_20s1922781g001 Phoenix dactylifera PDK_20s1922781g001 N
POPTR_0017s10780 Populus trichocarpa POPTR_0017s10780 N
POPTR_0013s05310 Populus trichocarpa POPTR_0013s05310 I
Pm000007 Prunus mume Pm000007 N
Traes_7DS_76515C538 Triticum aestivum Traes_7DS_76515C538 N
Traes_7AS_ADDEF000C Triticum aestivum Traes_7AS_ADDEF000C N