30146.m003509 (Ricinus communis)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 30146.m003509 T283883_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK29550.1
M02358_2.00 		Cannabis sativa
NNHDATCYNN
NNRGATHDNN		 PBM
Weirauch et al.(2014)
pTH9595 		0.909 1.000
AT3G16350
M01078_2.00 		Arabidopsis thaliana
NYTATCYDNN
NNHRGATARN		 PBM
Sullivan et al.(2014)
pTH7149 		0.899 0.957
fgenesh1_pg.scaffold_70000111
M02342_2.00 		Physcomitrella patens
NNHNATCBN
NVGATNDNN		 PBM
Weirauch et al.(2014)
pTH8492 		0.878 0.915
PK23829.1
M02355_2.00 		Cannabis sativa
VTTATCCD
HGGATAAB		 PBM
Weirauch et al.(2014)
pTH9592 		0.871 0.894
PK00738.1
M02346_2.00 		Cannabis sativa
NYWATCYDNN
NNHRGATWRN		 PBM
Weirauch et al.(2014)
pTH9487 		0.860 0.957
PK17526.1
M02353_2.00 		Cannabis sativa
NNTTATCCAN
NTGGATAANN		 PBM
Weirauch et al.(2014)
pTH9588 		0.860 0.851
KUA1
M02312_2.00 		Arabidopsis thaliana
NNTTATCCDN
NHGGATAANN		 PBM
Weirauch et al.(2014)
pTH7647 		0.839 0.894
KUA1
M07136_2.00 		Arabidopsis thaliana
WWHHTTATCCAHWW
WWDTGGATAADDWW		 Dap-seq
OMalley et al.(2016)
At5g47390_colamp_a 		0.839 0.894
KUA1
M07137_2.00 		Arabidopsis thaliana
HHWDYHTTATCCAHW
WDTGGATAADRHWDD		 Dap-seq
OMalley et al.(2016)
At5g47390_col_b 		0.839 0.894
AT5G61620
M07149_2.00 		Arabidopsis thaliana
WWHHTTATCCAHWWN
NWWDTGGATAADDWW		 Dap-seq
OMalley et al.(2016)
AT5G61620_col_a 		0.813 0.851
AT5G61620
M07150_2.00 		Arabidopsis thaliana
YHTTATCCAHW
WDTGGATAADR		 Dap-seq
OMalley et al.(2016)
AT5G61620_colamp_a 		0.813 0.851
AT1G19000
M02287_2.00 		Arabidopsis thaliana
NYTATCYDNN
NNHRGATARN		 PBM
Weirauch et al.(2014)
pTH7120 		0.809 0.851
AT1G19000
M07012_2.00 		Arabidopsis thaliana
HDYHTTATCCAHWW
WWDTGGATAADRHD		 Dap-seq
OMalley et al.(2016)
At1g19000_col_a 		0.809 0.851
AT1G19000
M07013_2.00 		Arabidopsis thaliana
WDYNTTATCCAHWW
WWDTGGATAANRHW		 Dap-seq
OMalley et al.(2016)
At1g19000_colamp_a 		0.809 0.851
AT5G56840
M07144_2.00 		Arabidopsis thaliana
WWYMTTATCCAWWWN
NWWWTGGATAAKRWW		 Dap-seq
OMalley et al.(2016)
AT5G56840_col_a 		0.768 0.830
AT5G56840
M07145_2.00 		Arabidopsis thaliana
HHHWWYHTTATCCWHW
WDWGGATAADRWWDDD		 Dap-seq
OMalley et al.(2016)
AT5G56840_colamp_a 		0.768 0.830
0600010132
M02360_2.00 		Ostreococcus tauri
NNVTTATCCDNNN
NNNHGGATAABNN		 PBM
Weirauch et al.(2014)
pTH9441 		0.762 0.851
AT3G10580
M07072_2.00 		Arabidopsis thaliana
AWBCTTATCYWHWHH
DDWDWRGATAAGVWT		 Dap-seq
OMalley et al.(2016)
AT3G10580_col_a 		0.759 0.702
AT3G10580
M07073_2.00 		Arabidopsis thaliana
CCGAWAAWNTCGGDD
HHCCGANWTTWTCGG		 Dap-seq
OMalley et al.(2016)
AT3G10580_colamp_a 		0.759 0.702
AT1G74840
M02291_2.00 		Arabidopsis thaliana
NGWTATCCRNN
NNYGGATAWCN		 PBM
Weirauch et al.(2014)
pTH7074 		0.740 0.809
AT1G74840
M07037_2.00 		Arabidopsis thaliana
HHTTATCCAHW
WDTGGATAADD		 Dap-seq
OMalley et al.(2016)
At1g74840_col100_a 		0.740 0.809
AT1G74840
M07038_2.00 		Arabidopsis thaliana
HWNHTTATCCAHWW
WWDTGGATAADNWD		 Dap-seq
OMalley et al.(2016)
At1g74840_colamp_a 		0.740 0.809
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30146.m003509 Myb 117 164

Links

Other Myb/SANT family TFs
Other Ricinus communis TFs

594 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_10869 Aegilops tauschii F775_10869 N 0.000
AMTR_s00159p00062070 Amborella trichopoda AMTR_s00159p00062070 N 0.000
Aquca_009_00241 Aquilegia coerulea Aquca_009_00241 N 0.000
fgenesh2_kg.4__2311__AT2G41710.2 Arabidopsis lyrata fgenesh2_kg.4__2311__AT2G41710.2 N 0.000
AT2G41710 Arabidopsis thaliana AT2G41710 N 0.000
Bostr.11568s0008 Boechera stricta Bostr.11568s0008 N 0.000
BRADI2G26987 Brachypodium distachyon BRADI2G26987 N 0.000
Bo3g035770 Brassica oleracea Bo3g035770 N 0.000
Bo4g013420 Brassica oleracea Bo4g013420 N 0.000
Bra004641 Brassica rapa Bra004641 N 0.000
PK15670.1 Cannabis sativa PK15670.1 N 0.000
PK18855.1 Cannabis sativa PK18855.1 N 0.000
PK12273.1 Cannabis sativa PK12273.1 N 0.000
Cagra.0914s0005 Capsella grandiflora Cagra.0914s0005 N 0.000
Carubv10023272m.g Capsella rubella Carubv10023272m.g N 0.000
evm.TU.supercontig_224.4 Carica papaya evm.TU.supercontig_224.4 N 0.000
evm.TU.supercontig_99.39 Carica papaya evm.TU.supercontig_99.39 N 0.000
evm.TU.supercontig_129.70 Carica papaya evm.TU.supercontig_129.70 N 0.000
Ca_07237 Cicer arietinum Ca_07237 N 0.000
Cla022214 Citrullus lanatus Cla022214 N 0.000
Ciclev10005012m.g Citrus clementina Ciclev10005012m.g N 0.000
orange1.1g018292m.g Citrus sinensis orange1.1g018292m.g N 0.000
Cucsa.353040 Cucumis sativus Cucsa.353040 I 0.000
Cucsa.338170 Cucumis sativus Cucsa.338170 N 0.000
Eucgr.A02341 Eucalyptus grandis Eucgr.A02341 N 0.000
Thhalv10016812m.g Eutrema salsugineum Thhalv10016812m.g N 0.000
GLYMA19G31960 Glycine max GLYMA19G31960 N 0.000
GLYMA02G33090 Glycine max GLYMA02G33090 N 0.000
GLYMA03G29240 Glycine max GLYMA03G29240 N 0.000
Gorai.003G091500 Gossypium raimondii Gorai.003G091500 N 0.000
MLOC_7325 Hordeum vulgare MLOC_7325 N 0.000
LPERR05G11930 Leersia perrieri LPERR05G11930 N 0.000
Lus10011730.g Linum usitatissimum Lus10011730.g N 0.000
Lus10039650.g Linum usitatissimum Lus10039650.g N 0.000
Lus10040140.g Linum usitatissimum Lus10040140.g N 0.000
Lus10000965.g Linum usitatissimum Lus10000965.g N 0.000
chr3.CM0452.130.nd Lotus japonicus chr3.CM0452.130.nd N 0.000
LjSGA_012098.1 Lotus japonicus LjSGA_012098.1 N 0.000
MDP0000803527 Malus domestica MDP0000803527 N 0.000
MDP0000314518 Malus domestica MDP0000314518 N 0.000
cassava421.valid.m1 Manihot esculenta cassava421.valid.m1 N 0.000
cassava40681.m1 Manihot esculenta cassava40681.m1 N 0.000
cassava19560.m1 Manihot esculenta cassava19560.m1 N 0.000
MTR_7g091390 Medicago truncatula MTR_7g091390 N 0.000
mgf019897m Mimulus guttatus mgf019897m N 0.000
mgf017600m Mimulus guttatus mgf017600m N 0.000
OBART05G15060 Oryza barthii OBART05G15060 N 0.000
OBART06G23380 Oryza barthii OBART06G23380 N 0.000
OB06G31060 Oryza brachyantha OB06G31060 N 0.000
OB05G22940 Oryza brachyantha OB05G22940 N 0.000
OB03G42600 Oryza brachyantha OB03G42600 N 0.000
ORGLA05G0129100 Oryza glaberrima ORGLA05G0129100 N 0.000
OGLUM05G15890 Oryza glumaepatula OGLUM05G15890 N 0.000
OGLUM06G03000 Oryza glumaepatula OGLUM06G03000 N 0.000
BGIOSGA023402 Oryza indica BGIOSGA023402 N 0.000
BGIOSGA019793 Oryza indica BGIOSGA019793 N 0.000
OLONG_002212 Oryza longistaminata OLONG_002212 N 0.000
OLONG_020459 Oryza longistaminata OLONG_020459 N 0.000
OMERI05G13370 Oryza meridionalis OMERI05G13370 N 0.000
OMERI06G23370 Oryza meridionalis OMERI06G23370 N 0.000
ONIVA05G15390 Oryza nivara ONIVA05G15390 N 0.000
OPUNC05G13110 Oryza punctata OPUNC05G13110 N 0.000
ORUFI05G16140 Oryza rufipogon ORUFI05G16140 N 0.000
Pavir.Ca01410 Panicum virgatum Pavir.Ca01410 N 0.000
Pavir.Cb01456 Panicum virgatum Pavir.Cb01456 N 0.000
PDK_20s1313371g002 Phoenix dactylifera PDK_20s1313371g002 N 0.000
POPTR_0006s04820 Populus trichocarpa POPTR_0006s04820 N 0.000
POPTR_0016s05670 Populus trichocarpa POPTR_0016s05670 N 0.000
PRUPE_ppa006202mg Prunus persica PRUPE_ppa006202mg N 0.000
30006.m000282 Ricinus communis 30006.m000282 N 0.000
30170.m013669 Ricinus communis 30170.m013669 N 0.000
SapurV1A.0037s0030 Salix purpurea SapurV1A.0037s0030 N 0.000
SapurV1A.3066s0020 Salix purpurea SapurV1A.3066s0020 N 0.000
Si021952m.g Setaria italica Si021952m.g N 0.000
Solyc02g030210.2 Solanum lycopersicum Solyc02g030210.2 N 0.000
Sb09g019190 Sorghum bicolor Sb09g019190 N 0.000
TCM_024554 Theobroma cacao TCM_024554 N 0.000
Traes_6AS_53FA034C9 Triticum aestivum Traes_6AS_53FA034C9 N 0.000
TRIUR3_07433 Triticum urartu TRIUR3_07433 N 0.000
BBM Vitis vinifera VIT_04s0023g00950 N 0.000
VIT_08s0007g08580 Vitis vinifera VIT_08s0007g08580 N 0.000
GRMZM2G146688 Zea mays GRMZM2G146688 N 0.000
GRMZM2G013657 Zea mays GRMZM2G013657 N 0.000