Cucsa.311420 (Cucumis sativus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cucsa.311420 T284510_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.820 0.899
MYB3R4
M07125_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R4_col_a 		0.796 0.871
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.795 0.863
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.795 0.863
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.779 0.885
Q948S6_TOBAC
M11075_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA1_01 		0.682 0.806
MYB3R5
M07116_2.00 		Arabidopsis thaliana
NWWWWNTDRCCGTTR
YAACGGYHANWWWWN		 Dap-seq
OMalley et al.(2016)
MYB3R5_col_a 		0.665 0.748
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.311420.1 Myb 39 85
Cucsa.311420.1 Myb 91 137
Cucsa.311420.1 Myb 143 187

Links

Other Myb/SANT family TFs
Other Cucumis sativus TFs

163 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_26965 Aegilops tauschii F775_26965 I
PK08629.1 Cannabis sativa PK08629.1 I
Cla011948 Citrullus lanatus Cla011948 I
Cucsa.074600 Cucumis sativus Cucsa.074600 I
Eucgr.F01091 Eucalyptus grandis Eucgr.F01091 I
GLYMA15G07620 Glycine max GLYMA15G07620 I
GLYMA16G04740 Glycine max GLYMA16G04740 I
GLYMA19G28476 Glycine max GLYMA19G28476 I
MLOC_4747 Hordeum vulgare MLOC_4747 I
MDP0000404409 Malus domestica MDP0000404409 I
MDP0000180683 Malus domestica MDP0000180683 I
MDP0000173636 Malus domestica MDP0000173636 I
MDP0000120881 Malus domestica MDP0000120881 I
cassava42314.valid.m1 Manihot esculenta cassava42314.valid.m1 I
MTR_2g093810 Medicago truncatula MTR_2g093810 I
GSMUA_Achr7G21770_001 Musa acuminata GSMUA_Achr7G21770_001 I
GSMUA_Achr3G18010_001 Musa acuminata GSMUA_Achr3G18010_001 I
GSMUA_Achr4G02380_001 Musa acuminata GSMUA_Achr4G02380_001 I
GSMUA_AchrUn_randomG17360_001 Musa acuminata GSMUA_AchrUn_randomG17360_001 I
OB11G11210 Oryza brachyantha OB11G11210 I
OB12G11500 Oryza brachyantha OB12G11500 I
OPUNC11G01330 Oryza punctata OPUNC11G01330 I
OPUNC12G01370 Oryza punctata OPUNC12G01370 I
POPTR_0011s04650 Populus trichocarpa POPTR_0011s04650 I
Pm011604 Prunus mume Pm011604 I
Pm025312 Prunus mume Pm025312 I
PRUPE_ppa007445mg Prunus persica PRUPE_ppa007445mg I
PRUPE_ppa007577mg Prunus persica PRUPE_ppa007577mg I
Si026530m.g Setaria italica Si026530m.g I
Si010410m.g Setaria italica Si010410m.g I
Solyc07g063420.2 Solanum lycopersicum Solyc07g063420.2 I
PGSC0003DMG400019293 Solanum tuberosum PGSC0003DMG400019293 I
Sb08g001940 Sorghum bicolor Sb08g001940 I
Sb05g001580 Sorghum bicolor Sb05g001580 I
Traes_5BL_CC18CAD72 Triticum aestivum Traes_5BL_CC18CAD72 D
GRMZM2G109627 Zea mays GRMZM2G109627 I