Cagra.2515s0028 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.2515s0028 T286094_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB3R5
M07116_2.00 		Arabidopsis thaliana
NWWWWNTDRCCGTTR
YAACGGYHANWWWWN		 Dap-seq
OMalley et al.(2016)
MYB3R5_col_a 		0.753 0.886
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.673 0.786
Q948S6_TOBAC
M11075_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA1_01 		0.669 0.750
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.2515s0028.1.p Myb 80 126
Cagra.2515s0028.1.p Myb 132 178
Cagra.2515s0028.1.p Myb 184 229

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

109 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
EmuJ_000419500 Echinococcus multilocularis EmuJ_000419500 N
HDID_0000507901 Hymenolepis diminuta HDID_0000507901 N
HmN_000865600 Hymenolepis microstoma HmN_000865600 N
MCOS_0000070201 Mesocestoides corti MCOS_0000070201 N
T265_05686 Opisthorchis viverrini T265_05686 N
SCUD_0000710001 Schistosoma curassoni SCUD_0000710001 N
A_02598 Schistosoma haematobium A_02598 N
Sjc_0040590 Schistosoma japonicum Sjc_0040590 N
Smp_073680 Schistosoma mansoni Smp_073680 N
SMRZ_0000513201 Schistosoma margrebowiei SMRZ_0000513201 N
SROB_0001853501 Schistosoma rodhaini SROB_0001853501 N
TASK_0000929501 Taenia asiatica TASK_0000929501 N
TRE_0001104801 Trichobilharzia regenti TRE_0001104801 N