CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Cagra.4093s0003 *(Capsella grandiflora)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00249 (Myb_DNA-binding)	IPR014778	Cagra.4093s0003	T286135_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PC-MYB1 M07110_2.00	Arabidopsis thaliana	NDWWNTDRCCGTTRN	NYAACGGYHANWWHN	Dap-seq OMalley et al.(2016) MYB3R1_col_a	0.853	0.971
PC-MYB1 M07111_2.00	Arabidopsis thaliana	DWHNTDRCCGTTR	YAACGGYHANDWH	Dap-seq OMalley et al.(2016) MYB3R1_colamp_a	0.853	0.971
Q948S5_TOBAC M11074_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MYBA2_01	0.778	0.871
PK12011.1 M01279_2.00	Cannabis sativa	HAACGGHHNN	NNDDCCGTTD	PBM Lambert et al.(2019) pTH11423	0.764	0.856
MYB3R4 M07125_2.00	Arabidopsis thaliana	NDWWNTDRCCGTTRN	NYAACGGYHANWWHN	Dap-seq OMalley et al.(2016) MYB3R4_col_a	0.701	0.813
Q948S6_TOBAC M11075_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MYBA1_01	0.670	0.791
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Cagra.4093s0003.1.p	Myb	31	77	KGQWTPEEDEVLCKAVERFQGKNWKKIAECFKDRTDVQCLHRWQKVL
Cagra.4093s0003.1.p	Myb	83	129	KGPWSKEEDNTIIALVERYGAKKWSTISQHLPGRIGKQCRERWHNHL
Cagra.4093s0003.1.p	Myb	135	179	KNAWTQEEELTLIRAHQIYGNKWAELMKLLPGRSDNSIKNHWNSS

Links
Other Myb/SANT family TFs
Other *Capsella grandiflora* TFs