Carubv10019440m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10019440m.g T286389_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
F3A4.140
M02299_2.00 		Arabidopsis thaliana
YAACBGYY
RRCVGTTR		 PBM
Weirauch et al.(2014)
pTH7112 		0.879 0.978
F3A4.140
M07095_2.00 		Arabidopsis thaliana
TAACBGYHWHNNHNN
NNDNNDWDRCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB77_col_a 		0.879 0.978
F3A4.140
M07096_2.00 		Arabidopsis thaliana
AACCGYAACCSTAWHWWAMV
BKTWWDWTASGGTTRCGGTT		 Dap-seq
OMalley et al.(2016)
MYB77_colamp_a 		0.879 0.978
F3A4.140
M02701_2.00 		Arabidopsis thaliana
SYAACYGYCVHBN
NVDBGRCRGTTRS		 SELEX
Mathelier et al.(2014)
MA0575.1 		0.879 0.978
F3A4.140
M11044_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB77_01 		0.879 0.978
MYB44
M01082_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH7078 		0.803 0.882
MYB44
M07155_2.00 		Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD		 Dap-seq
OMalley et al.(2016)
MYB44_colamp_a 		0.803 0.882
MYB44
M07156_2.00 		Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD		 Dap-seq
OMalley et al.(2016)
MYB44_col 		0.803 0.882
MYB73
M07114_2.00 		Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB73_col_a 		0.742 0.817
PK28565.1
M02357_2.00 		Cannabis sativa
TAACBGTY
RACVGTTA		 PBM
Weirauch et al.(2014)
pTH9653 		0.738 0.806
AtMYB70
M01071_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH8588 		0.738 0.796
AtMYB70
M07048_2.00 		Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR		 Dap-seq
OMalley et al.(2016)
MYB70_col_a 		0.738 0.796
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10019440m Myb 6 52
Carubv10019440m Myb 58 103

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

238 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL001230 Aedes aegypti AAEL001230 N
AARA002561 Anopheles arabiensis AARA002561 N
ACHR008455 Anopheles christyi ACHR008455 N
ACUA023712 Anopheles culicifacies ACUA023712 N
ADIR004650 Anopheles dirus ADIR004650 N
AFUN000252 Anopheles funestus AFUN000252 N
AGAP000875 Anopheles gambiae AGAP000875 N
AMEC011182 Anopheles melas AMEC011182 N
AMIN005800 Anopheles minimus AMIN005800 N
AQUA002448 Anopheles quadriannulatus AQUA002448 N
ASIS023610 Anopheles sinensis ASIS023610 N
ASTEI01189 Anopheles stephensi ASTEI01189 N
BGLB002715 Biomphalaria glabrata BGLB002715 N
BGIBMGA006961 Bombyx mori BGIBMGA006961 N
Cmyd_10017545 Chelonia mydas Cmyd_10017545 N
MYT1L Choloepus hoffmanni ENSCHOG00000002551 N
DAPPUDRAFT_241731 Daphnia pulex DAPPUDRAFT_241731 N
GF20773 Drosophila ananassae FBgn0097779 N
GH24141 Drosophila grimshawi FBgn0131597 N
CG43689 Drosophila melanogaster FBgn0263772 I
GA24131 Drosophila pseudoobscura FBgn0245530 N
GM12320 Drosophila sechellia FBgn0167257 N
GJ17015 Drosophila virilis FBgn0204192 N
GK10260 Drosophila willistoni FBgn0212275 N
GE16325 Drosophila yakuba FBgn0233857 N
MDOA006645 Musca domestica MDOA006645 N
Ogr11018 Ophisaurus gracilis Ogr11018 N
ENSPMAG00000002519 Petromyzon marinus ENSPMAG00000002519 N
nRc.2.0.1.g46521 Romanomermis culicivorax nRc.2.0.1.g46521 N
ST18 Sorex araneus ENSSARG00000014015 N
TC004325 Tribolium castaneum TC004325 N
EFV52052 Trichinella spiralis EFV52052 N
ENSXMAG00000007322 Xiphophorus maculatus ENSXMAG00000007322 N