gene02230-v1.0-hybrid (Fragaria vesca)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gene02230-v1.0-hybrid T287226_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK21687.1
M01282_2.00 		Cannabis sativa
HWAAACCYH
DRGGTTTWD		 PBM
Lambert et al.(2019)
pTH11299 		0.901 0.957
TRP2
M07092_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCC
GGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_col_a 		0.901 0.957
TRP2
M07093_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCT
AGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_colamp_a 		0.901 0.957
TRP1
M07148_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCTAA
TTAGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP1_col 		0.883 0.936
TRP5
M01266_2.00 		Arabidopsis thaliana
NHWAAACCYH
DRGGTTTWDN		 PBM
Lambert et al.(2019)
pTH9963 		0.841 0.936
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna02230.1-v1.0-hybrid Myb 521 571

Links

Other Myb/SANT family TFs
Other Fragaria vesca TFs

197 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCCAN_20244 Ancylostoma caninum ANCCAN_20244 N
ANCCEY_12709 Ancylostoma ceylanicum ANCCEY_12709 N
ANCDUO_04672 Ancylostoma duodenale ANCDUO_04672 N
CBN24539 Caenorhabditis brenneri CBN24539 I
CBG10881 Caenorhabditis briggsae CBG10881 I
mdl-1 Caenorhabditis elegans WBGene00003163 D
CJA08920 Caenorhabditis japonica CJA08920 I
DICVIV_06590 Dictyocaulus viviparus DICVIV_06590 I
HCOI00642400 Haemonchus contortus HCOI00642400 I
HPLM_0001847601 Haemonchus placei HPLM_0001847601 I
HPBE_0001223101 Heligmosomoides bakeri HPBE_0001223101 N
Hba_13962 Heterorhabditis bacteriophora Hba_13962 N
nLs.2.1.2.g08650 Litomosoides sigmodontis nLs.2.1.2.g08650 N
NECAME_13995 Necator americanus NECAME_13995 N
OESDEN_00841 Oesophagostomum dentatum OESDEN_00841 N
OESDEN_22889 Oesophagostomum dentatum OESDEN_22889 N
TELCIR_11825 Teladorsagia circumcincta TELCIR_11825 I
TCLT_0000614701 Thelazia callipaeda TCLT_0000614701 N