Gorai.002G089900 (Gossypium raimondii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Gorai.002G089900 T287490_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q9FR42_TOBAC
M11076_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBAS1_01 		0.801 0.839
myb.Ph3
M02704_2.00 		Petunia x hybrida
WAACNGTYW
WRACNGTTW		 SELEX
Mathelier et al.(2014)
MA0054.1 		0.794 0.839
myb.Ph3
M11070_2.00 		Petunia x hybrida
RTAACSGTTTYHW
WDRAAACSGTTAY		 Transfac
Matys et al.(2006)
P$MYBPH3_01 		0.794 0.839
myb.Ph3
M11071_2.00 		Petunia x hybrida
STAACTAACTHHH
DDDAGTTAGTTAS		 Transfac
Matys et al.(2006)
P$MYBPH3_02 		0.794 0.839
MYB101
M07051_2.00 		Arabidopsis thaliana
NWHHNWAACCGWWHH
DDWWCGGTTWNDDWN		 Dap-seq
OMalley et al.(2016)
MYB101_col_a 		0.782 0.817
MYB101
M07052_2.00 		Arabidopsis thaliana
DHHHVTAACYGWHWN
NWDWCRGTTABDDDH		 Dap-seq
OMalley et al.(2016)
MYB101_colamp_a 		0.782 0.817
Gam1
M02703_2.00 		Hordeum vulgare
NVYAACSGMC
GKCSGTTRBN		 SELEX
Mathelier et al.(2014)
MA0034.1 		0.778 0.849
Gam1
M11061_2.00 		Hordeum vulgare
YAACSRHM
KDYSGTTR		 Transfac
Matys et al.(2006)
P$GAMYB_01 		0.778 0.849
GAM1_ORYSI
M11055_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GAMYB_Q2 		0.761 0.839
MYB33
M02306_2.00 		Arabidopsis thaliana
HAACNRHHNN
NNDDYNGTTD		 PBM
Weirauch et al.(2014)
pTH8204 		0.710 0.817
MYB33
M07120_2.00 		Arabidopsis thaliana
NTAACYGWHWH
DWDWCRGTTAN		 Dap-seq
OMalley et al.(2016)
MYB33_col_a 		0.710 0.817
ATMYB65
M01076_2.00 		Arabidopsis thaliana
HAACNRHHN
NDDYNGTTD		 PBM
Sullivan et al.(2014)
pTH7084 		0.702 0.817
ATMYB65
M07076_2.00 		Arabidopsis thaliana
DHHNTAACBGHMW
WKDCVGTTANDDH		 Dap-seq
OMalley et al.(2016)
MYB65_col200_a 		0.702 0.817
ATMYB65
M07077_2.00 		Arabidopsis thaliana
NTAACYGHMWHNDHN
NDHNDWKDCRGTTAN		 Dap-seq
OMalley et al.(2016)
MYB65_colamp_a 		0.702 0.817
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.002G089900.1 Myb 32 79
Gorai.002G089900.1 Myb 85 130

Links

Other Myb/SANT family TFs
Other Gossypium raimondii TFs

253 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_01009 Aegilops tauschii F775_01009 N
F775_02805 Aegilops tauschii F775_02805 N
F775_04526 Aegilops tauschii F775_04526 N
Bostr.19427s0042 Boechera stricta Bostr.19427s0042 I
MLOC_56065 Hordeum vulgare MLOC_56065 N
LPERR03G08340 Leersia perrieri LPERR03G08340 N
OBART03G09330 Oryza barthii OBART03G09330 N
OB03G19470 Oryza brachyantha OB03G19470 N
OGLUM03G09410 Oryza glumaepatula OGLUM03G09410 N
BGIOSGA011179 Oryza indica BGIOSGA011179 N
OMERI03G08710 Oryza meridionalis OMERI03G08710 N
ONIVA02G39270 Oryza nivara ONIVA02G39270 N
OPUNC03G08950 Oryza punctata OPUNC03G08950 N
ORUFI03G09460 Oryza rufipogon ORUFI03G09460 N
OS03G0229100 Oryza sativa OS03G0229100 N
Pavir.Ha01098 Panicum virgatum Pavir.Ha01098 N
Pavir.Hb01590 Panicum virgatum Pavir.Hb01590 N
Traes_4BL_2F534B325 Triticum aestivum Traes_4BL_2F534B325 N
Traes_4DL_F822F371E Triticum aestivum Traes_4DL_F822F371E N