Gorai.003G130700 (Gossypium raimondii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Gorai.003G130700 T287516_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK21687.1
M01282_2.00 		Cannabis sativa
HWAAACCYH
DRGGTTTWD		 PBM
Lambert et al.(2019)
pTH11299 		0.909 0.979
TRP2
M07092_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCC
GGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_col_a 		0.901 0.957
TRP2
M07093_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCT
AGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_colamp_a 		0.901 0.957
TRP1
M07148_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCTAA
TTAGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP1_col 		0.891 0.979
TRP5
M01266_2.00 		Arabidopsis thaliana
NHWAAACCYH
DRGGTTTWDN		 PBM
Lambert et al.(2019)
pTH9963 		0.849 0.979
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.003G130700.1 Myb 597 647
Gorai.003G130700.2 Myb 587 637
Gorai.003G130700.3 Myb 576 626
Gorai.003G130700.4 Myb 566 616
Gorai.003G130700.5 Myb 597 627
Gorai.003G130700.6 Myb 597 647

Links

Other Myb/SANT family TFs
Other Gossypium raimondii TFs

207 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_003_00608 Aquilegia coerulea Aquca_003_00608 N 0.000
fgenesh1_pm.C_scaffold_7002128 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7002128 I 0.000
GATA17 Arabidopsis lyrata fgenesh2_kg.3__1856__AT3G16870.1 I 0.000
GATA15 Arabidopsis lyrata fgenesh2_kg.3__690__AT3G06740.1 I 0.000
GATA16 Arabidopsis lyrata scaffold_801309.1 I 0.000
GATA15 Arabidopsis thaliana AT3G06740 D 0.000
GATA17 Arabidopsis thaliana AT3G16870 I 0.000
AT4G16141 Arabidopsis thaliana AT4G16141 I 0.000
GATA16 Arabidopsis thaliana AT5G49300 D 0.000
Bostr.15774s0060 Boechera stricta Bostr.15774s0060 I 0.000
Bostr.22252s0362 Boechera stricta Bostr.22252s0362 I 0.000
Bostr.28625s0006 Boechera stricta Bostr.28625s0006 I 0.000
Bostr.30275s0055 Boechera stricta Bostr.30275s0055 I 0.000
BRADI1G03020 Brachypodium distachyon BRADI1G03020 I 0.000
Bo00847s050 Brassica oleracea Bo00847s050 I 0.000
Bo1g055120 Brassica oleracea Bo1g055120 I 0.000
Bo1g122970 Brassica oleracea Bo1g122970 I 0.000
Bo3g068560 Brassica oleracea Bo3g068560 I 0.000
Bo5g123610 Brassica oleracea Bo5g123610 I 0.000
Bo7g092660 Brassica oleracea Bo7g092660 I 0.000
Bo7g104200 Brassica oleracea Bo7g104200 I 0.000
Bra020650 Brassica rapa Bra020650 I 0.000
Bra021209 Brassica rapa Bra021209 I 0.000
Bra022184 Brassica rapa Bra022184 I 0.000
Bra033533 Brassica rapa Bra033533 I 0.000
Bra037421 Brassica rapa Bra037421 I 0.000
PK18820.1 Cannabis sativa PK18820.1 I 0.000
PK21934.1 Cannabis sativa PK21934.1 I 0.000
Cagra.0053s0014 Capsella grandiflora Cagra.0053s0014 I 0.000
Cagra.0133s0025 Capsella grandiflora Cagra.0133s0025 I 0.000
Cagra.5497s0020 Capsella grandiflora Cagra.5497s0020 I 0.000
Carubv10005860m.g Capsella rubella Carubv10005860m.g I 0.000
Carubv10014665m.g Capsella rubella Carubv10014665m.g I 0.000
Carubv10014841m.g Capsella rubella Carubv10014841m.g I 0.000
Carubv10027332m.g Capsella rubella Carubv10027332m.g I 0.000
evm.TU.supercontig_151.51 Carica papaya evm.TU.supercontig_151.51 I 0.000
evm.TU.supercontig_48.133 Carica papaya evm.TU.supercontig_48.133 I 0.000
evm.TU.supercontig_9.102 Carica papaya evm.TU.supercontig_9.102 I 0.000
Ca_02992 Cicer arietinum Ca_02992 I 0.000
Cla009422 Citrullus lanatus Cla009422 I 0.000
Cla022104 Citrullus lanatus Cla022104 I 0.000
Ciclev10003698m.g Citrus clementina Ciclev10003698m.g I 0.000
Ciclev10006161m.g Citrus clementina Ciclev10006161m.g I 0.000
Ciclev10022856m.g Citrus clementina Ciclev10022856m.g I 0.000
orange1.1g030971m.g Citrus sinensis orange1.1g030971m.g I 0.000
orange1.1g032112m.g Citrus sinensis orange1.1g032112m.g I 0.000
orange1.1g033001m.g Citrus sinensis orange1.1g033001m.g I 0.000
Cucsa.069460 Cucumis sativus Cucsa.069460 I 0.000
Cucsa.252730 Cucumis sativus Cucsa.252730 I 0.000
Eucgr.A00193 Eucalyptus grandis Eucgr.A00193 I 0.000
Eucgr.H04023 Eucalyptus grandis Eucgr.H04023 I 0.000
Thhalv10005103m.g Eutrema salsugineum Thhalv10005103m.g I 0.000
Thhalv10021612m.g Eutrema salsugineum Thhalv10021612m.g I 0.000
Thhalv10021708m.g Eutrema salsugineum Thhalv10021708m.g I 0.000
Thhalv10026300m.g Eutrema salsugineum Thhalv10026300m.g I 0.000
gene05175-v1.0-hybrid Fragaria vesca gene05175-v1.0-hybrid I 0.000
GLYMA07G37190 Glycine max GLYMA07G37190 I 0.000
GLYMA17G03410 Glycine max GLYMA17G03410 I 0.000
Gorai.002G029400 Gossypium raimondii Gorai.002G029400 I 0.000
Gorai.005G065300 Gossypium raimondii Gorai.005G065300 I 0.000
Gorai.007G125000 Gossypium raimondii Gorai.007G125000 I 0.000
Gorai.008G142200 Gossypium raimondii Gorai.008G142200 I 0.000
Gorai.013G127900 Gossypium raimondii Gorai.013G127900 I 0.000
Gorai.013G206400 Gossypium raimondii Gorai.013G206400 N 0.000
LPERR03G33900 Leersia perrieri LPERR03G33900 I 0.000
Lus10016849.g Linum usitatissimum Lus10016849.g I 0.000
Lus10031464.g Linum usitatissimum Lus10031464.g I 0.000
Lus10037721.g Linum usitatissimum Lus10037721.g I 0.000
LjSGA_011217.1 Lotus japonicus LjSGA_011217.1 I 0.000
MDP0000309902 Malus domestica MDP0000309902 I 0.000
cassava15577.m1 Manihot esculenta cassava15577.m1 I 0.000
cassava15588.m1 Manihot esculenta cassava15588.m1 I 0.000
cassava37139.valid.m1 Manihot esculenta cassava37139.valid.m1 I 0.000
cassava43030.valid.m1 Manihot esculenta cassava43030.valid.m1 I 0.000
MTR_4g121110 Medicago truncatula MTR_4g121110 I 0.000
mgf003937m Mimulus guttatus mgf003937m I 0.000
mgf022078m Mimulus guttatus mgf022078m I 0.000
OBART03G39750 Oryza barthii OBART03G39750 I 0.000
OGLUM03G39650 Oryza glumaepatula OGLUM03G39650 I 0.000
BGIOSGA013867 Oryza indica BGIOSGA013867 I 0.000
BGIOSGA013869 Oryza indica BGIOSGA013869 I 0.000
OLONG_023900 Oryza longistaminata OLONG_023900 I 0.000
OMERI03G36600 Oryza meridionalis OMERI03G36600 I 0.000
ONIVA03G41600 Oryza nivara ONIVA03G41600 I 0.000
OPUNC03G36900 Oryza punctata OPUNC03G36900 I 0.000
OPUNC03G36910 Oryza punctata OPUNC03G36910 I 0.000
ORUFI03G41540 Oryza rufipogon ORUFI03G41540 I 0.000
OS03G0831200 Oryza sativa OS03G0831200 I 0.000
POPTR_0005s02040 Populus trichocarpa POPTR_0005s02040 I 0.000
POPTR_0008s22950 Populus trichocarpa POPTR_0008s22950 I 0.000
POPTR_0010s00360 Populus trichocarpa POPTR_0010s00360 I 0.000
Pm003128 Prunus mume Pm003128 I 0.000
Pm008287 Prunus mume Pm008287 I 0.000
PRUPE_ppa013171mg Prunus persica PRUPE_ppa013171mg I 0.000
PRUPE_ppa015310mg Prunus persica PRUPE_ppa015310mg I 0.000
29889.m003248 Ricinus communis 29889.m003248 I 0.000
SapurV1A.0107s0060 Salix purpurea SapurV1A.0107s0060 I 0.000
SapurV1A.0186s0560 Salix purpurea SapurV1A.0186s0560 I 0.000
SapurV1A.0739s0060 Salix purpurea SapurV1A.0739s0060 I 0.000
SapurV1A.2413s0010 Salix purpurea SapurV1A.2413s0010 I 0.000
Solyc01g100220.2 Solanum lycopersicum Solyc01g100220.2 I 0.000
Solyc05g054400.2 Solanum lycopersicum Solyc05g054400.2 I 0.000
Solyc12g099370.1 Solanum lycopersicum Solyc12g099370.1 I 0.000
PGSC0003DMG400002337 Solanum tuberosum PGSC0003DMG400002337 I 0.000
PGSC0003DMG400004624 Solanum tuberosum PGSC0003DMG400004624 I 0.000
PGSC0003DMG400023434 Solanum tuberosum PGSC0003DMG400023434 I 0.000
PGSC0003DMG400024783 Solanum tuberosum PGSC0003DMG400024783 I 0.000
TCM_004753 Theobroma cacao TCM_004753 I 0.000
TCM_021303 Theobroma cacao TCM_021303 I 0.000
TCM_026732 Theobroma cacao TCM_026732 I 0.000
VIT_05s0077g01450 Vitis vinifera VIT_05s0077g01450 I 0.000
VIT_14s0060g01520 Vitis vinifera VIT_14s0060g01520 I 0.000