Carubv10005860m.g (Capsella rubella)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Carubv10005860m.g T196450_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA16
M06897_2.00 		Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT		 Dap-seq
OMalley et al.(2016)
GATA16_col_a 		0.828 0.806
GATA15
M01997_2.00 		Arabidopsis thaliana
NNHGATCNN
NNGATCDNN		 PBM
Weirauch et al.(2014)
pTH7662 		0.808 0.806
GATA15
M06886_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATS
SATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
GATA15_col_b 		0.808 0.806
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10005860m GATA 36 71

Links

Other GATA family TFs
Other Capsella rubella TFs

112 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT4G16141 Arabidopsis thaliana AT4G16141 I 0.867
Bra012742 Brassica rapa Bra012742 I 0.867
fgenesh1_pm.C_scaffold_7002128 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7002128 I 0.867
Bostr.30275s0055 Boechera stricta Bostr.30275s0055 I 0.867
Cagra.0053s0014 Capsella grandiflora Cagra.0053s0014 I 0.867
GATA17 Arabidopsis thaliana AT3G16870 I 0.862
Bo1g055120 Brassica oleracea Bo1g055120 I 0.862
Bo1g122970 Brassica oleracea Bo1g122970 I 0.862
Bo3g068560 Brassica oleracea Bo3g068560 I 0.862
Bo7g104200 Brassica oleracea Bo7g104200 I 0.862
Bra021209 Brassica rapa Bra021209 I 0.862
Bra022184 Brassica rapa Bra022184 I 0.862
Bra033533 Brassica rapa Bra033533 I 0.862
GATA17 Arabidopsis lyrata fgenesh2_kg.3__1856__AT3G16870.1 I 0.862
PGSC0003DMG400023434 Solanum tuberosum PGSC0003DMG400023434 I 0.862
Solyc05g054400.2 Solanum lycopersicum Solyc05g054400.2 I 0.862
Bostr.28625s0006 Boechera stricta Bostr.28625s0006 I 0.862
Cagra.5497s0020 Capsella grandiflora Cagra.5497s0020 I 0.862
Carubv10014665m.g Capsella rubella Carubv10014665m.g I 0.862
Thhalv10021612m.g Eutrema salsugineum Thhalv10021612m.g I 0.862
Thhalv10026300m.g Eutrema salsugineum Thhalv10026300m.g I 0.862
Bo5g123610 Brassica oleracea Bo5g123610 I 0.861
PRUPE_ppa013171mg Prunus persica PRUPE_ppa013171mg I 0.852
TCM_021303 Theobroma cacao TCM_021303 I 0.852
Cla022104 Citrullus lanatus Cla022104 I 0.852
Pm008287 Prunus mume Pm008287 I 0.852
cassava43030.valid.m1 Manihot esculenta cassava43030.valid.m1 I 0.852
Cucsa.252730 Cucumis sativus Cucsa.252730 I 0.852
mgf003937m Mimulus guttatus mgf003937m I 0.852
Eucgr.A00193 Eucalyptus grandis Eucgr.A00193 I 0.852
evm.TU.supercontig_9.102 Carica papaya evm.TU.supercontig_9.102 I 0.852
gene05175-v1.0-hybrid Fragaria vesca gene05175-v1.0-hybrid I 0.852
Gorai.005G065300 Gossypium raimondii Gorai.005G065300 I 0.852
Lus10016849.g Linum usitatissimum Lus10016849.g I 0.852
Lus10037721.g Linum usitatissimum Lus10037721.g I 0.852
MTR_4g121110 Medicago truncatula MTR_4g121110 I 0.851
POPTR_0008s22950 Populus trichocarpa POPTR_0008s22950 I 0.851
POPTR_0010s00360 Populus trichocarpa POPTR_0010s00360 I 0.851
Ca_02992 Cicer arietinum Ca_02992 I 0.851
SapurV1A.0739s0060 Salix purpurea SapurV1A.0739s0060 I 0.851
SapurV1A.2413s0010 Salix purpurea SapurV1A.2413s0010 I 0.851
LjSGA_011217.1 Lotus japonicus LjSGA_011217.1 I 0.851
PGSC0003DMG400004624 Solanum tuberosum PGSC0003DMG400004624 I 0.848
Solyc12g099370.1 Solanum lycopersicum Solyc12g099370.1 I 0.848
VIT_05s0077g01450 Vitis vinifera VIT_05s0077g01450 I 0.848
Cla009422 Citrullus lanatus Cla009422 I 0.848
Cucsa.069460 Cucumis sativus Cucsa.069460 I 0.848
Ciclev10006161m.g Citrus clementina Ciclev10006161m.g I 0.848
Eucgr.H04023 Eucalyptus grandis Eucgr.H04023 I 0.848
orange1.1g032112m.g Citrus sinensis orange1.1g032112m.g I 0.848
PK18820.1 Cannabis sativa PK18820.1 I 0.848
GLYMA07G37190 Glycine max GLYMA07G37190 I 0.846
GLYMA17G03410 Glycine max GLYMA17G03410 I 0.846
29889.m003248 Ricinus communis 29889.m003248 I 0.846
cassava37139.valid.m1 Manihot esculenta cassava37139.valid.m1 I 0.846
Bo00847s050 Brassica oleracea Bo00847s050 I 0.839
GATA16 Arabidopsis lyrata scaffold_801309.1 I 0.839
Bostr.15774s0060 Boechera stricta Bostr.15774s0060 I 0.839
Carubv10027332m.g Capsella rubella Carubv10027332m.g I 0.839
Thhalv10005103m.g Eutrema salsugineum Thhalv10005103m.g I 0.839
mgf022078m Mimulus guttatus mgf022078m I 0.838
Gorai.002G029400 Gossypium raimondii Gorai.002G029400 I 0.836
POPTR_0005s02040 Populus trichocarpa POPTR_0005s02040 I 0.834
TCM_026732 Theobroma cacao TCM_026732 I 0.834
cassava15577.m1 Manihot esculenta cassava15577.m1 I 0.834
cassava15588.m1 Manihot esculenta cassava15588.m1 I 0.834
evm.TU.supercontig_151.51 Carica papaya evm.TU.supercontig_151.51 I 0.834
evm.TU.supercontig_48.133 Carica papaya evm.TU.supercontig_48.133 I 0.834
Gorai.013G127900 Gossypium raimondii Gorai.013G127900 I 0.834
SapurV1A.0107s0060 Salix purpurea SapurV1A.0107s0060 I 0.834
SapurV1A.0186s0560 Salix purpurea SapurV1A.0186s0560 I 0.834
TCM_004753 Theobroma cacao TCM_004753 I 0.833
Ciclev10003698m.g Citrus clementina Ciclev10003698m.g I 0.833
Gorai.007G125000 Gossypium raimondii Gorai.007G125000 I 0.833
Gorai.008G142200 Gossypium raimondii Gorai.008G142200 I 0.833
orange1.1g030971m.g Citrus sinensis orange1.1g030971m.g I 0.833
GATA16 Arabidopsis thaliana AT5G49300 D 0.828
PGSC0003DMG400002337 Solanum tuberosum PGSC0003DMG400002337 I 0.828
BGIOSGA013867 Oryza indica BGIOSGA013867 I 0.823
BGIOSGA013869 Oryza indica BGIOSGA013869 I 0.823
BRADI1G03020 Brachypodium distachyon BRADI1G03020 I 0.823
LPERR03G33900 Leersia perrieri LPERR03G33900 I 0.823
OBART03G39750 Oryza barthii OBART03G39750 I 0.823
OGLUM03G39650 Oryza glumaepatula OGLUM03G39650 I 0.823
OLONG_023900 Oryza longistaminata OLONG_023900 I 0.823
OMERI03G36600 Oryza meridionalis OMERI03G36600 I 0.823
ONIVA03G41600 Oryza nivara ONIVA03G41600 I 0.823
OPUNC03G36900 Oryza punctata OPUNC03G36900 I 0.823
OPUNC03G36910 Oryza punctata OPUNC03G36910 I 0.823
ORUFI03G41540 Oryza rufipogon ORUFI03G41540 I 0.823
OS03G0831200 Oryza sativa OS03G0831200 I 0.823
PGSC0003DMG400024783 Solanum tuberosum PGSC0003DMG400024783 I 0.822
Solyc01g100220.2 Solanum lycopersicum Solyc01g100220.2 I 0.822
Aquca_003_00608 Aquilegia coerulea Aquca_003_00608 N 0.822
PK21934.1 Cannabis sativa PK21934.1 I 0.819
Lus10031464.g Linum usitatissimum Lus10031464.g I 0.814
MDP0000309902 Malus domestica MDP0000309902 I 0.814
Bra020650 Brassica rapa Bra020650 I 0.812
Gorai.013G206400 Gossypium raimondii Gorai.013G206400 N 0.811
GATA15 Arabidopsis thaliana AT3G06740 D 0.808
Bo7g092660 Brassica oleracea Bo7g092660 I 0.808
Bra037421 Brassica rapa Bra037421 I 0.808
GATA15 Arabidopsis lyrata fgenesh2_kg.3__690__AT3G06740.1 I 0.808
VIT_14s0060g01520 Vitis vinifera VIT_14s0060g01520 I 0.808
Bostr.22252s0362 Boechera stricta Bostr.22252s0362 I 0.808
Cagra.0133s0025 Capsella grandiflora Cagra.0133s0025 I 0.808
Carubv10014841m.g Capsella rubella Carubv10014841m.g I 0.808
Thhalv10021708m.g Eutrema salsugineum Thhalv10021708m.g I 0.808
PRUPE_ppa015310mg Prunus persica PRUPE_ppa015310mg I 0.806
Pm003128 Prunus mume Pm003128 I 0.806
Ciclev10022856m.g Citrus clementina Ciclev10022856m.g I 0.806
orange1.1g033001m.g Citrus sinensis orange1.1g033001m.g I 0.806