Bra012742 (Brassica rapa)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 Bra012742 T191952_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA16
M06897_2.00 		Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT		 Dap-seq
OMalley et al.(2016)
GATA16_col_a 		0.828 0.806
GATA15
M01997_2.00 		Arabidopsis thaliana
NNHGATCNN
NNGATCDNN		 PBM
Weirauch et al.(2014)
pTH7662 		0.808 0.806
GATA15
M06886_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATS
SATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
GATA15_col_b 		0.808 0.806
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra012742.1-P GATA 39 74

Links

Other GATA family TFs
Other Brassica rapa TFs

112 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT4G16141 Arabidopsis thaliana AT4G16141 I 0.867
fgenesh1_pm.C_scaffold_7002128 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7002128 I 0.867
Bostr.30275s0055 Boechera stricta Bostr.30275s0055 I 0.867
Cagra.0053s0014 Capsella grandiflora Cagra.0053s0014 I 0.867
Carubv10005860m.g Capsella rubella Carubv10005860m.g I 0.867
GATA17 Arabidopsis thaliana AT3G16870 I 0.862
Bo1g055120 Brassica oleracea Bo1g055120 I 0.862
Bo1g122970 Brassica oleracea Bo1g122970 I 0.862
Bo3g068560 Brassica oleracea Bo3g068560 I 0.862
Bo7g104200 Brassica oleracea Bo7g104200 I 0.862
Bra021209 Brassica rapa Bra021209 I 0.862
Bra022184 Brassica rapa Bra022184 I 0.862
Bra033533 Brassica rapa Bra033533 I 0.862
GATA17 Arabidopsis lyrata fgenesh2_kg.3__1856__AT3G16870.1 I 0.862
PGSC0003DMG400023434 Solanum tuberosum PGSC0003DMG400023434 I 0.862
Solyc05g054400.2 Solanum lycopersicum Solyc05g054400.2 I 0.862
Bostr.28625s0006 Boechera stricta Bostr.28625s0006 I 0.862
Cagra.5497s0020 Capsella grandiflora Cagra.5497s0020 I 0.862
Carubv10014665m.g Capsella rubella Carubv10014665m.g I 0.862
Thhalv10021612m.g Eutrema salsugineum Thhalv10021612m.g I 0.862
Thhalv10026300m.g Eutrema salsugineum Thhalv10026300m.g I 0.862
Bo5g123610 Brassica oleracea Bo5g123610 I 0.861
PRUPE_ppa013171mg Prunus persica PRUPE_ppa013171mg I 0.852
TCM_021303 Theobroma cacao TCM_021303 I 0.852
Cla022104 Citrullus lanatus Cla022104 I 0.852
Pm008287 Prunus mume Pm008287 I 0.852
cassava43030.valid.m1 Manihot esculenta cassava43030.valid.m1 I 0.852
Cucsa.252730 Cucumis sativus Cucsa.252730 I 0.852
mgf003937m Mimulus guttatus mgf003937m I 0.852
Eucgr.A00193 Eucalyptus grandis Eucgr.A00193 I 0.852
evm.TU.supercontig_9.102 Carica papaya evm.TU.supercontig_9.102 I 0.852
gene05175-v1.0-hybrid Fragaria vesca gene05175-v1.0-hybrid I 0.852
Gorai.005G065300 Gossypium raimondii Gorai.005G065300 I 0.852
Lus10016849.g Linum usitatissimum Lus10016849.g I 0.852
Lus10037721.g Linum usitatissimum Lus10037721.g I 0.852
MTR_4g121110 Medicago truncatula MTR_4g121110 I 0.851
POPTR_0008s22950 Populus trichocarpa POPTR_0008s22950 I 0.851
POPTR_0010s00360 Populus trichocarpa POPTR_0010s00360 I 0.851
Ca_02992 Cicer arietinum Ca_02992 I 0.851
SapurV1A.0739s0060 Salix purpurea SapurV1A.0739s0060 I 0.851
SapurV1A.2413s0010 Salix purpurea SapurV1A.2413s0010 I 0.851
LjSGA_011217.1 Lotus japonicus LjSGA_011217.1 I 0.851
PGSC0003DMG400004624 Solanum tuberosum PGSC0003DMG400004624 I 0.848
Solyc12g099370.1 Solanum lycopersicum Solyc12g099370.1 I 0.848
VIT_05s0077g01450 Vitis vinifera VIT_05s0077g01450 I 0.848
Cla009422 Citrullus lanatus Cla009422 I 0.848
Cucsa.069460 Cucumis sativus Cucsa.069460 I 0.848
Ciclev10006161m.g Citrus clementina Ciclev10006161m.g I 0.848
Eucgr.H04023 Eucalyptus grandis Eucgr.H04023 I 0.848
orange1.1g032112m.g Citrus sinensis orange1.1g032112m.g I 0.848
PK18820.1 Cannabis sativa PK18820.1 I 0.848
GLYMA07G37190 Glycine max GLYMA07G37190 I 0.846
GLYMA17G03410 Glycine max GLYMA17G03410 I 0.846
29889.m003248 Ricinus communis 29889.m003248 I 0.846
cassava37139.valid.m1 Manihot esculenta cassava37139.valid.m1 I 0.846
Bo00847s050 Brassica oleracea Bo00847s050 I 0.839
GATA16 Arabidopsis lyrata scaffold_801309.1 I 0.839
Bostr.15774s0060 Boechera stricta Bostr.15774s0060 I 0.839
Carubv10027332m.g Capsella rubella Carubv10027332m.g I 0.839
Thhalv10005103m.g Eutrema salsugineum Thhalv10005103m.g I 0.839
mgf022078m Mimulus guttatus mgf022078m I 0.838
Gorai.002G029400 Gossypium raimondii Gorai.002G029400 I 0.836
POPTR_0005s02040 Populus trichocarpa POPTR_0005s02040 I 0.834
TCM_026732 Theobroma cacao TCM_026732 I 0.834
cassava15577.m1 Manihot esculenta cassava15577.m1 I 0.834
cassava15588.m1 Manihot esculenta cassava15588.m1 I 0.834
evm.TU.supercontig_151.51 Carica papaya evm.TU.supercontig_151.51 I 0.834
evm.TU.supercontig_48.133 Carica papaya evm.TU.supercontig_48.133 I 0.834
Gorai.013G127900 Gossypium raimondii Gorai.013G127900 I 0.834
SapurV1A.0107s0060 Salix purpurea SapurV1A.0107s0060 I 0.834
SapurV1A.0186s0560 Salix purpurea SapurV1A.0186s0560 I 0.834
TCM_004753 Theobroma cacao TCM_004753 I 0.833
Ciclev10003698m.g Citrus clementina Ciclev10003698m.g I 0.833
Gorai.007G125000 Gossypium raimondii Gorai.007G125000 I 0.833
Gorai.008G142200 Gossypium raimondii Gorai.008G142200 I 0.833
orange1.1g030971m.g Citrus sinensis orange1.1g030971m.g I 0.833
GATA16 Arabidopsis thaliana AT5G49300 D 0.828
PGSC0003DMG400002337 Solanum tuberosum PGSC0003DMG400002337 I 0.828
BGIOSGA013867 Oryza indica BGIOSGA013867 I 0.823
BGIOSGA013869 Oryza indica BGIOSGA013869 I 0.823
BRADI1G03020 Brachypodium distachyon BRADI1G03020 I 0.823
LPERR03G33900 Leersia perrieri LPERR03G33900 I 0.823
OBART03G39750 Oryza barthii OBART03G39750 I 0.823
OGLUM03G39650 Oryza glumaepatula OGLUM03G39650 I 0.823
OLONG_023900 Oryza longistaminata OLONG_023900 I 0.823
OMERI03G36600 Oryza meridionalis OMERI03G36600 I 0.823
ONIVA03G41600 Oryza nivara ONIVA03G41600 I 0.823
OPUNC03G36900 Oryza punctata OPUNC03G36900 I 0.823
OPUNC03G36910 Oryza punctata OPUNC03G36910 I 0.823
ORUFI03G41540 Oryza rufipogon ORUFI03G41540 I 0.823
OS03G0831200 Oryza sativa OS03G0831200 I 0.823
PGSC0003DMG400024783 Solanum tuberosum PGSC0003DMG400024783 I 0.822
Solyc01g100220.2 Solanum lycopersicum Solyc01g100220.2 I 0.822
Aquca_003_00608 Aquilegia coerulea Aquca_003_00608 N 0.822
PK21934.1 Cannabis sativa PK21934.1 I 0.819
Lus10031464.g Linum usitatissimum Lus10031464.g I 0.814
MDP0000309902 Malus domestica MDP0000309902 I 0.814
Bra020650 Brassica rapa Bra020650 I 0.812
Gorai.013G206400 Gossypium raimondii Gorai.013G206400 N 0.811
GATA15 Arabidopsis thaliana AT3G06740 D 0.808
Bo7g092660 Brassica oleracea Bo7g092660 I 0.808
Bra037421 Brassica rapa Bra037421 I 0.808
GATA15 Arabidopsis lyrata fgenesh2_kg.3__690__AT3G06740.1 I 0.808
VIT_14s0060g01520 Vitis vinifera VIT_14s0060g01520 I 0.808
Bostr.22252s0362 Boechera stricta Bostr.22252s0362 I 0.808
Cagra.0133s0025 Capsella grandiflora Cagra.0133s0025 I 0.808
Carubv10014841m.g Capsella rubella Carubv10014841m.g I 0.808
Thhalv10021708m.g Eutrema salsugineum Thhalv10021708m.g I 0.808
PRUPE_ppa015310mg Prunus persica PRUPE_ppa015310mg I 0.806
Pm003128 Prunus mume Pm003128 I 0.806
Ciclev10022856m.g Citrus clementina Ciclev10022856m.g I 0.806
orange1.1g033001m.g Citrus sinensis orange1.1g033001m.g I 0.806