Lus10031322.g (Linum usitatissimum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Lus10031322.g T288133_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.858 0.913
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.817 0.848
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.817 0.848
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.817 0.848
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.776 0.848
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.776 0.848
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.776 0.848
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.776 0.848
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.776 0.848
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.738 0.804
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.730 0.696
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.730 0.696
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.730 0.696
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.728 0.761
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.728 0.761
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.707 0.717
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.693 0.783
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.693 0.783
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10031322 Myb 59 104

Links

Other Myb/SANT family TFs
Other Linum usitatissimum TFs

302 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000002034 Ailuropoda melanoleuca ENSAMEG00000002034 I
Alligator_sinensis_CCG019192.1 Alligator sinensis Alligator_sinensis_CCG019192.1 I
ENSAPLG00000007481 Anas platyrhynchos ENSAPLG00000007481 I
MYNN Anolis carolinensis ENSACAG00000015699 I
Afo_R003947 Aptenodytes forsteri Afo_R003947 I
ENSP00000326240-D1 Bos grunniens ENSP00000326240-D1 I
MYNN Callithrix jacchus ENSCJAG00000002629 I
Aan_R012711 Calypte anna Aan_R012711 I
MYNN Canis familiaris ENSCAFG00000014700 I
MYNN Cavia porcellus ENSCPOG00000011640 I
ENSCSAG00000012570 Chlorocebus sabaeus ENSCSAG00000012570 I
MYNN Dasypus novemcinctus ENSDNOG00000004681 I
MYNN Equus caballus ENSECAG00000016427 I
MYNN Felis catus ENSFCAG00000000505 I
ENSFALG00000008628 Ficedula albicollis ENSFALG00000008628 I
MYNN Gallus gallus ENSGALG00000009409 I
Gfo_R004538 Geospiza fortis Gfo_R004538 I
MYNN Gorilla gorilla ENSGGOG00000022638 I
MYNN Homo sapiens ENSG00000085274 D
ENSSTOG00000004642 Ictidomys tridecemlineatus ENSSTOG00000004642 I
ENSMMUP00000038685 Macaca fascicularis ENSMMUP00000038685 I
MYNN Macaca mulatta ENSMMUG00000021875 I
MYNN Meleagris gallopavo ENSMGAG00000010294 I
MYNN Monodelphis domestica ENSMODG00000016120 I
ENSMPUG00000017089 Mustela putorius furo ENSMPUG00000017089 I
Mynn Mus musculus ENSMUSG00000037730 I
Myotis_brandtii_MYNN_10024775 Myotis brandtii Myotis_brandtii_MYNN_10024775 I
ENSNLEG00000005059 Nomascus leucogenys ENSNLEG00000005059 I
MYNN Ornithorhynchus anatinus ENSOANG00000010325 I
MYNN Oryctolagus cuniculus ENSOCUG00000003252 I
MYNN Otolemur garnettii ENSOGAG00000004734 I
ENSOARG00000000757 Ovis aries ENSOARG00000000757 I
MYNN Pan troglodytes ENSPTRG00000015605 I
ENSPANG00000026081 Papio anubis ENSPANG00000026081 I
ENSPSIG00000004647 Pelodiscus sinensis ENSPSIG00000004647 I
ENSPPYG00000014280 Pongo abelii ENSPPYG00000014280 I
MYNN Procavia capensis ENSPCAG00000015202 I
Mynn Rattus norvegicus ENSRNOG00000027923 I
ENSSHAG00000016096 Sarcophilus harrisii ENSSHAG00000016096 I
MYNN Sus scrofa ENSSSCG00000026829 I
MYNN Taeniopygia guttata ENSTGUG00000010998 I
MYNN Tupaia belangeri ENSTBEG00000007630 I
MYNN Vicugna pacos ENSVPAG00000007981 I
mynn.L Xenopus laevis XB-GENE-941014 I
XP_002931590 Xenopus tropicalis XP_002931590 I