Pavir.Aa02813 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Aa02813 T288979_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G38300
M07056_2.00 		Arabidopsis thaliana
WAHATTCYHTH
DADRGAATDTW		 Dap-seq
OMalley et al.(2016)
AT2G38300_col_a 		0.832 0.915
PK26523.1
M01283_2.00 		Cannabis sativa
NWHATTCYNN
NNRGAATDWN		 PBM
Lambert et al.(2019)
pTH11304 		0.824 0.915
AT2G40260
M07057_2.00 		Arabidopsis thaliana
HHWDWAHATTCYHTN
NADRGAATDTWHWDD		 Dap-seq
OMalley et al.(2016)
AT2G40260_col_a 		0.803 0.851
AT2G40260
M07058_2.00 		Arabidopsis thaliana
NNDDWHHNDDWAHATTCYHT
ADRGAATDTWHHNDDWHHNN		 Dap-seq
OMalley et al.(2016)
AT2G40260_colamp_a 		0.803 0.851
PHL1
M02310_2.00 		Arabidopsis thaliana
NWKATNCBNN
NNVGNATMWN		 PBM
Weirauch et al.(2014)
pTH7122 		0.711 0.702
PHL1
M07132_2.00 		Arabidopsis thaliana
MDRGAATATTCBNWN
NWNVGAATATTCYHK		 Dap-seq
OMalley et al.(2016)
At5g29000_col_a 		0.711 0.702
PHR1
M02302_2.00 		Arabidopsis thaliana
NWKATNCBNN
NNVGNATMWN		 PBM
Weirauch et al.(2014)
pTH7249 		0.681 0.702
AT1G14600
M01268_2.00 		Arabidopsis thaliana
NWAYATTCYN
NRGAATRTWN		 PBM
Lambert et al.(2019)
pTH11557 		0.673 0.787
PHL6
M02295_2.00 		Arabidopsis thaliana
NNWKATNCBN
NVGNATMWNN		 PBM
Weirauch et al.(2014)
pTH7071 		0.662 0.660
PHL6
M07083_2.00 		Arabidopsis thaliana
NDGAAAACH
DGTTTTCHN		 Dap-seq
OMalley et al.(2016)
At3g13040_col_b 		0.662 0.660
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Aa02813.1.p Myb 233 284

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

438 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ca_17354 Cicer arietinum Ca_17354 N
GLYMA09G05840 Glycine max GLYMA09G05840 N
GLYMA09G05850 Glycine max GLYMA09G05850 N
GLYMA09G05860 Glycine max GLYMA09G05860 N
GLYMA15G17090 Glycine max GLYMA15G17090 N
GLYMA15G17100 Glycine max GLYMA15G17100 N
Gorai.006G250100 Gossypium raimondii Gorai.006G250100 N
Gorai.006G250000 Gossypium raimondii Gorai.006G250000 N
LPERR06G03670 Leersia perrieri LPERR06G03670 N
MTR_2g438180 Medicago truncatula MTR_2g438180 N
OBART06G03990 Oryza barthii OBART06G03990 N
OBART08G14070 Oryza barthii OBART08G14070 N
ORGLA06G0037100 Oryza glaberrima ORGLA06G0037100 N
OGLUM06G04110 Oryza glumaepatula OGLUM06G04110 N
BGIOSGA022362 Oryza indica BGIOSGA022362 N
BGIOSGA027003 Oryza indica BGIOSGA027003 N
OMERI06G04590 Oryza meridionalis OMERI06G04590 N
ONIVA06G20210 Oryza nivara ONIVA06G20210 N
ONIVA03G12480 Oryza nivara ONIVA03G12480 N
OPUNC06G03800 Oryza punctata OPUNC06G03800 N
ORUFI06G04020 Oryza rufipogon ORUFI06G04020 N
ORUFI08G15950 Oryza rufipogon ORUFI08G15950 N