Pavir.J31180 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J31180 T289449_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q2TCH0_PETHY
M11072_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PH4_01 		0.690 0.828
MYB3
M02288_2.00 		Arabidopsis thaliana
NNYACCTACCN
NGGTAGGTRNN		 PBM
Weirauch et al.(2014)
pTH7125 		0.669 0.710
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J31180.1.p Myb 19 66
Pavir.J31180.1.p Myb 72 117

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

258 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CaO19.921 Candida albicans CaO19.921 N
CLUG_04929 Candida lusitaniae CLUG_04929 N
G210_3437 Candida maltosa G210_3437 N
CORT_0E05910 Candida orthopsilosis CORT_0E05910 N
CPAG_03309 Candida parapsilosis CPAG_03309 N
CANTEDRAFT_114588 Candida tenuis CANTEDRAFT_114588 N
CTRG_05284 Candida tropicalis CTRG_05284 N
CLUG_04929 Clavispora lusitaniae CLUG_04929 N
DEHA2E19250g Debaryomyces hansenii DEHA2E19250g N
LELG_03737 Lodderomyces elongisporus LELG_03737 N
estExt_fgenesh1_pg.C_chr_7.10234 Pichia stipitis estExt_fgenesh1_pg.C_chr_7.10234 N
PICST_68338 Scheffersomyces stipitis PICST_68338 N