CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bo9g113820 *(Brassica oleracea)* NAC/NAM
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF02365 (NAM)	IPR003441	Bo9g113820	T292485_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
NAC098 M07239_2.00	Arabidopsis thaliana	CKTGTNNNDYAMGYHA	TDRCKTRHNNNACAMG	Dap-seq OMalley et al.(2016) CUC2_colamp_a	0.968	0.982
NAC098 M07240_2.00	Arabidopsis thaliana	NNNTWNCKTGHNNHWCAMG	CKTGWDNNDCAMGNWANNN	Dap-seq OMalley et al.(2016) CUC2_col	0.968	0.982
NAC079 M02373_2.00	Arabidopsis thaliana	TTGCGTRY	RYACGCAA	PBM Weirauch et al.(2014) pTH7399	0.930	0.825
NAC079 M07228_2.00	Arabidopsis thaliana	CBWNHNNHACACGYWA	TWRCGTGTDNNDNWVG	Dap-seq OMalley et al.(2016) ANAC079_colamp_a	0.930	0.825
NAC079 M07229_2.00	Arabidopsis thaliana	NTWNCKTVHNNHWCAMGYWAH	DTWRCKTGWDNNDBAMGNWAN	Dap-seq OMalley et al.(2016) ANAC079_col	0.930	0.825
ANAC080 M02376_2.00	Arabidopsis lyrata	NBAMKNHWNN	NNWDNMKTVN	PBM Weirauch et al.(2014) pTH9230	0.929	0.825
NAC100 M02375_2.00	Arabidopsis thaliana	NBAMKNHWNN	NNWDNMKTVN	PBM Weirauch et al.(2014) pTH7239	0.928	0.833
NAC92 M00979_2.00	Arabidopsis thaliana	NNDYACGBHA	TDVCGTRHNN	PBM Lindemose et al.(2014) ANAC092	0.927	0.842
NAC92 M00730_2.00	Arabidopsis thaliana	DYACGNHAN	NTDNCGTRH	PBM Chang et al.(2013) pTH7335	0.927	0.842
NAC92 M07234_2.00	Arabidopsis thaliana	TWNCKTGHNNHDCAMGYWAY	RTWRCKTGHDNNDCAMGNWA	Dap-seq OMalley et al.(2016) ANAC092_colamp_a	0.927	0.842
NAC92 M07235_2.00	Arabidopsis thaliana	WRCKTGTNNNDCAMG	CKTGHNNNACAMGYW	Dap-seq OMalley et al.(2016) ANAC092_col_v3a	0.927	0.842
NAC59 M11080_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ANAC059_01	0.926	0.825
ANAC100 M02377_2.00	Arabidopsis lyrata	DYACGYHANN	NNTDRCGTRH	PBM Weirauch et al.(2014) pTH9234	0.925	0.833
e_gw1.288.15.1 M02381_2.00	Physcomitrella patens	NNNBAMKNHW	WDNMKTVNNN	PBM Weirauch et al.(2014) pTH8467	0.922	0.816
NAC054 M07205_2.00	Arabidopsis thaliana	CKTVHNNHRCACGYHANCW	WGNTDRCGTGYDNNDBAMG	Dap-seq OMalley et al.(2016) CUC1_colamp_a	0.906	0.842
NAC054 M07206_2.00	Arabidopsis thaliana	TWNCKTGHNNNDCAMG	CKTGHNNNDCAMGNWA	Dap-seq OMalley et al.(2016) CUC1_col_v31	0.906	0.842
e_gw1.327.11.1 M02382_2.00	Physcomitrella patens	NTTDYRTWWN	NWWAYRHAAN	PBM Weirauch et al.(2014) pTH8478	0.904	0.754
NAC031 M07182_2.00	Arabidopsis thaliana	NTWDCKTGTNNHWYACGY	RCGTRWDNNACAMGHWAN	Dap-seq OMalley et al.(2016) CUC3_col_a	0.904	0.719
NAC031 M07183_2.00	Arabidopsis thaliana	CKTGTNNHDCACGYHA	TDRCGTGHDNNACAMG	Dap-seq OMalley et al.(2016) CUC3_colamp_a	0.904	0.719
ANAC087 M07232_2.00	Arabidopsis thaliana	TDNCKTSHNNNDYACGYHANB	VNTDRCGTRHNNNDSAMGNHA	Dap-seq OMalley et al.(2016) ANAC087_colamp_a	0.894	0.763
ANAC087 M07233_2.00	Arabidopsis thaliana	TWNCKTGWNNNDCAMGYHA	TDRCKTGHNNNWCAMGNWA	Dap-seq OMalley et al.(2016) ANAC087_col_v3a	0.894	0.763
anac058 M00886_2.00	Arabidopsis thaliana	CGTTGTCT	AGACAACG	PBM Franco-Zorrilla et al.(2014) ANAC58	0.892	0.825
anac058 M07210_2.00	Arabidopsis thaliana	CKTGHNNNRCAMGYWA	TWRCKTGYNNNDCAMG	Dap-seq OMalley et al.(2016) ANAC058_col_a	0.892	0.825
anac058 M07211_2.00	Arabidopsis thaliana	TDCKTGHNNNDCAMGHHA	TDDCKTGHNNNDCAMGHA	Dap-seq OMalley et al.(2016) ANAC058_colamp_a	0.892	0.825
e_gw1.159.34.1 M02379_2.00	Physcomitrella patens	DYACGNHANN	NNTDNCGTRH	PBM Weirauch et al.(2014) pTH8477	0.892	0.781
ANAC038 M07188_2.00	Arabidopsis thaliana	DNCKTRHNNHDCAMGYWA	TWRCKTGHDNNDYAMGNH	Dap-seq OMalley et al.(2016) ANAC038_col_a	0.871	0.763
ANAC038 M07189_2.00	Arabidopsis thaliana	TTDCTTGWNNHDYAMGHHAHH	DDTDDCKTRHDNNWCAAGHAA	Dap-seq OMalley et al.(2016) ANAC038_colamp_a	0.871	0.763
For this family, TFs with SR scores > 0.870* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bo9g113820.1	NAC/NAM	18	144	PPGFRFHPTDEELITHYLLRKVLDGCFSSRAIAEVDLNKCEPWQLPGKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYKGRAPKGEKTNWVMHEYRL

Links
Other NAC/NAM family TFs
Other *Brassica oleracea* TFs

461 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
F775_01009	Aegilops tauschii	F775_01009	N
F775_02805	Aegilops tauschii	F775_02805	N
F775_04526	Aegilops tauschii	F775_04526	N
Bostr.19427s0042	Boechera stricta	Bostr.19427s0042	I
MLOC_56065	Hordeum vulgare	MLOC_56065	N
LPERR03G08340	Leersia perrieri	LPERR03G08340	N
OBART03G09330	Oryza barthii	OBART03G09330	N
OB03G19470	Oryza brachyantha	OB03G19470	N
OGLUM03G09410	Oryza glumaepatula	OGLUM03G09410	N
BGIOSGA011179	Oryza indica	BGIOSGA011179	N
OMERI03G08710	Oryza meridionalis	OMERI03G08710	N
ONIVA02G39270	Oryza nivara	ONIVA02G39270	N
OPUNC03G08950	Oryza punctata	OPUNC03G08950	N
ORUFI03G09460	Oryza rufipogon	ORUFI03G09460	N
OS03G0229100	Oryza sativa	OS03G0229100	N
Pavir.Ha01098	Panicum virgatum	Pavir.Ha01098	N
Pavir.Hb01590	Panicum virgatum	Pavir.Hb01590	N
Traes_4BL_2F534B325	Triticum aestivum	Traes_4BL_2F534B325	N
Traes_4DL_F822F371E	Triticum aestivum	Traes_4DL_F822F371E	N

Bo9g113820 (Brassica oleracea) NAC/NAM

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

461 Related TFs

Bo9g113820 **(Brassica oleracea)
NAC/NAM**