Bra004385 (Brassica rapa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 Bra004385 T292532_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC029
M00973_2.00 		Arabidopsis thaliana
NBACGBMWNN
NNWKVCGTVN		 PBM
Lindemose et al.(2014)
NAP 		0.967 0.973
NAC029
M02369_2.00 		Arabidopsis thaliana
NRGTCAWNN
NNWTGACYN		 PBM
Weirauch et al.(2014)
pTH8397 		0.967 0.973
NAC029
M07180_2.00 		Arabidopsis thaliana
NCGTVHNNNWYACGBMA
TKVCGTRWNNNDBACGN		 Dap-seq
OMalley et al.(2016)
NAP_colamp_a 		0.967 0.973
NAC029
M07181_2.00 		Arabidopsis thaliana
WYACGBMAYYD
HRRTKVCGTRW		 Dap-seq
OMalley et al.(2016)
NAP_col_v3a 		0.967 0.973
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra004385.1-P NAC/NAM 10 134

Links

Other NAC/NAM family TFs
Other Brassica rapa TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LFY Arabidopsis lyrata Al_scaffold_0008_2690 I 0.000
LFY Arabidopsis thaliana AT5G61850 D 0.000
Bostr.26833s0050 Boechera stricta Bostr.26833s0050 I 0.000
Bo2g161690 Brassica oleracea Bo2g161690 I 0.000
Bo3g109270 Brassica oleracea Bo3g109270 I 0.000
Bra019619 Brassica rapa Bra019619 I 0.000
Bra029305 Brassica rapa Bra029305 I 0.000
Cagra.4553s0022 Capsella grandiflora Cagra.4553s0022 I 0.000
Carubv10028602m.g Capsella rubella Carubv10028602m.g I 0.000
Ca_01386 Cicer arietinum Ca_01386 I 0.000
Cla019619 Citrullus lanatus Cla019619 I 0.000
Ciclev10033942m.g Citrus clementina Ciclev10033942m.g I 0.000
orange1.1g044766m.g Citrus sinensis orange1.1g044766m.g I 0.000
Cucsa.156880 Cucumis sativus Cucsa.156880 I 0.000
Eucgr.K02192 Eucalyptus grandis Eucgr.K02192 I 0.000
Thhalv10005606m.g Eutrema salsugineum Thhalv10005606m.g I 0.000
GLYMA06G17170 Glycine max GLYMA06G17170 I 0.000
Gorai.001G053900 Gossypium raimondii Gorai.001G053900 I 0.000
Lus10016732.g Linum usitatissimum Lus10016732.g I 0.000
Lus10022427.g Linum usitatissimum Lus10022427.g I 0.000
cassava19992.m1 Manihot esculenta cassava19992.m1 I 0.000
cassava40548.m1 Manihot esculenta cassava40548.m1 I 0.000
MTR_3g098560 Medicago truncatula MTR_3g098560 I 0.000
mgf013601m Mimulus guttatus mgf013601m I 0.000
FL Populus trichocarpa POPTR_0015s11820 I 0.000
Pm024610 Prunus mume Pm024610 I 0.000
PRUPE_ppa006372mg Prunus persica PRUPE_ppa006372mg I 0.000
30147.m014401 Ricinus communis 30147.m014401 I 0.000
SapurV1A.2394s0010 Salix purpurea SapurV1A.2394s0010 I 0.000
Solyc03g118160.1 Solanum lycopersicum Solyc03g118160.1 I 0.000
TCM_014768 Theobroma cacao TCM_014768 I 0.000
LFY Vitis vinifera VIT_17s0000g00150 I 0.000